G1728065


Basic Information

Item Value
gene id G1728065
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32244012 ~ 32244301 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1979420
CTTAGGAGAAATACCTTTGGTGGCGATTACATCTTTAAGatgtcttgggtatgtctatcaACTTTGCACATCTAGATTtgggggattttctcccattcttccttgcagattatCTCAAGCTCTTAAGTTCAATTTGGAGCagtggtgaacagcaatcttcaagttttTCCACATATTTTCAATGAGATTcaagtctgggccactcaagaacttTCACAttattgttctgaagccattccagcattgctttggctgtacactaccggtcaaaagattTTGAACACCTattc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1979420 True 290 lncRNA 0.39 1 32244012 32244301

Neighbor

gene id symbol gene type direction distance location
LOC110500255 LOC106609093 coding upstream 9271 32231148 ~ 32234741 (+)
LOC110501065 LOC106609145 coding upstream 26218 32189542 ~ 32217794 (+)
LOC110500253 LOC106609146 coding upstream 63409 32168800 ~ 32180603 (+)
LOC110500252 LOC106609149 coding upstream 81556 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 coding upstream 99126 32114413 ~ 32144886 (+)
arf4 LOC106609140 coding downstream 6321 32250622 ~ 32254298 (+)
vatf LOC106609141 coding downstream 13179 32257480 ~ 32261475 (+)
LOC110500258 LOC106609138 coding downstream 65742 32310043 ~ 32343558 (+)
LOC110500259 LOC106609137 coding downstream 121219 32365520 ~ 32395907 (+)
LOC110500261 irf5 coding downstream 165571 32409872 ~ 32420565 (+)
G1728054 LOC106609139 non-coding upstream 729 32241436 ~ 32243283 (+)
G1728064 NA non-coding upstream 3837 32239976 ~ 32240175 (+)
G1728052 LOC106609139 non-coding upstream 4925 32236321 ~ 32239087 (+)
G1728051 NA non-coding upstream 23391 32197519 ~ 32220621 (+)
G1728066 NA non-coding downstream 696 32244997 ~ 32245365 (+)
G1728072 NA non-coding downstream 17525 32261826 ~ 32266171 (+)
G1728073 NA non-coding downstream 20016 32264317 ~ 32314244 (+)
G1728111 NA non-coding downstream 81297 32325598 ~ 32325890 (+)
G1728112 NA non-coding downstream 81733 32326034 ~ 32326289 (+)
G1727220 NA other upstream 679418 31564135 ~ 31564594 (+)
G1727181 NA other upstream 735640 31508056 ~ 31508372 (+)
G1727146 NA other upstream 793895 31449396 ~ 31450117 (+)
G1729465 NA other downstream 1077152 33321453 ~ 33321761 (+)
LOC110500285 fam19a5 other downstream 1465791 33709461 ~ 33869016 (+)
G1732028 NA other downstream 3194988 35439289 ~ 35484354 (+)
G1732735 NA other downstream 3797030 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 3988821 36189389 ~ 36237829 (+)

Expression


Co-expression Network