G1728115


Basic Information

Item Value
gene id G1728115
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32329294 ~ 32329562 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1979470
ggatggtgttcttcggcttgcaagcctccccctttttcctccacacataacgatggtcattatggccaaacagttctatttatgtttcatcagaccagaggacatttctccaaaaggtacaatctttgtccacatgtgcaattgcaaactgtagtttggcttttttatggcggttttggagccgtggcttcttccttgctgagcagcctttcaggttatttcaatataggactcgttttactgtgaaattgctcccaaggatgaaccag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1979470 True 269 lncRNA 0.44 1 32329294 32329562

Neighbor

gene id symbol gene type direction distance location
vatf LOC106609141 coding upstream 67819 32257480 ~ 32261475 (+)
arf4 LOC106609140 coding upstream 74996 32250622 ~ 32254298 (+)
LOC110500255 LOC106609093 coding upstream 94553 32231148 ~ 32234741 (+)
LOC110501065 LOC106609145 coding upstream 111500 32189542 ~ 32217794 (+)
LOC110500253 LOC106609146 coding upstream 148691 32168800 ~ 32180603 (+)
LOC110500259 LOC106609137 coding downstream 35958 32365520 ~ 32395907 (+)
LOC110500261 irf5 coding downstream 80310 32409872 ~ 32420565 (+)
LOC100135983 opn1sw coding downstream 126559 32456121 ~ 32458130 (+)
LOC110500263 LOC106609128 coding downstream 144419 32473981 ~ 32494341 (+)
LOC110500266 LOC106609126 coding downstream 193210 32522772 ~ 32531043 (+)
G1728114 NA non-coding upstream 298 32328782 ~ 32328996 (+)
G1728112 NA non-coding upstream 3005 32326034 ~ 32326289 (+)
G1728111 NA non-coding upstream 3404 32325598 ~ 32325890 (+)
G1728073 NA non-coding upstream 15050 32264317 ~ 32314244 (+)
G1728072 NA non-coding upstream 63123 32261826 ~ 32266171 (+)
G1728131 NA non-coding downstream 23064 32352626 ~ 32352910 (+)
G1728132 NA non-coding downstream 24474 32354036 ~ 32356561 (+)
G1728188 LOC106609130 non-coding downstream 128730 32458292 ~ 32462718 (+)
G1728191 NA non-coding downstream 135640 32465202 ~ 32468500 (+)
G1728170 NA non-coding downstream 165048 32494610 ~ 32495559 (+)
LOC110500252 LOC106609149 other upstream 166902 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 192598 32114413 ~ 32144886 (+)
G1727220 NA other upstream 764700 31564135 ~ 31564594 (+)
G1727181 NA other upstream 820922 31508056 ~ 31508372 (+)
G1727146 NA other upstream 879177 31449396 ~ 31450117 (+)
G1729465 NA other downstream 991891 33321453 ~ 33321761 (+)
LOC110500285 fam19a5 other downstream 1380530 33709461 ~ 33869016 (+)
G1732028 NA other downstream 3109727 35439289 ~ 35484354 (+)
G1732735 NA other downstream 3711769 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 3903560 36189389 ~ 36237829 (+)

Expression


Co-expression Network