G1728131


Basic Information

Item Value
gene id G1728131
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32352626 ~ 32352910 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1979486
GGAAAAGGTGCTTGTCTAAGCCCAAACAGCCCGCTCTCCTCATCAATGTGTAGGCTGTTTCGACCCAGCTAGAACCGTCTCTGTACAACAATCTCTGGGCTGCTTGAAGCCGGAAAGCCATGATTCTAGAGGAAATGTCCACCAGGCCTTGCCCACCCTTGTGCAGTGGCAGGTACAGGGCTGCAGTTTTAATCCAGTGTTGTACAGACCAGAATAAATTGACAAGGGTCCTCTGAAGCTCTTGTATCAGACACTTTGGTGGCTACAAAATCATTAGTCTGTGCC

Function

NR:

description
pol-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1979486 True 285 lncRNA 0.49 1 32352626 32352910

Neighbor

gene id symbol gene type direction distance location
LOC110500258 LOC106609138 coding upstream 9068 32310043 ~ 32343558 (+)
vatf LOC106609141 coding upstream 91151 32257480 ~ 32261475 (+)
arf4 LOC106609140 coding upstream 98328 32250622 ~ 32254298 (+)
LOC110500255 LOC106609093 coding upstream 117885 32231148 ~ 32234741 (+)
LOC110501065 LOC106609145 coding upstream 134832 32189542 ~ 32217794 (+)
LOC110500259 LOC106609137 coding downstream 12610 32365520 ~ 32395907 (+)
LOC110500261 irf5 coding downstream 56962 32409872 ~ 32420565 (+)
LOC100135983 opn1sw coding downstream 103211 32456121 ~ 32458130 (+)
LOC110500263 LOC106609128 coding downstream 121071 32473981 ~ 32494341 (+)
LOC110500266 LOC106609126 coding downstream 169862 32522772 ~ 32531043 (+)
G1728115 NA non-coding upstream 23064 32329294 ~ 32329562 (+)
G1728114 NA non-coding upstream 23630 32328782 ~ 32328996 (+)
G1728112 NA non-coding upstream 26337 32326034 ~ 32326289 (+)
G1728111 NA non-coding upstream 26736 32325598 ~ 32325890 (+)
G1728073 NA non-coding upstream 38382 32264317 ~ 32314244 (+)
G1728132 NA non-coding downstream 1126 32354036 ~ 32356561 (+)
G1728188 LOC106609130 non-coding downstream 105382 32458292 ~ 32462718 (+)
G1728191 NA non-coding downstream 112292 32465202 ~ 32468500 (+)
G1728170 NA non-coding downstream 141700 32494610 ~ 32495559 (+)
G1728252 NA non-coding downstream 291884 32644794 ~ 32645016 (+)
LOC110500252 LOC106609149 other upstream 190234 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 215930 32114413 ~ 32144886 (+)
G1727220 NA other upstream 788032 31564135 ~ 31564594 (+)
G1727181 NA other upstream 844254 31508056 ~ 31508372 (+)
G1727146 NA other upstream 902509 31449396 ~ 31450117 (+)
G1729465 NA other downstream 968543 33321453 ~ 33321761 (+)
LOC110500285 fam19a5 other downstream 1357182 33709461 ~ 33869016 (+)
G1732028 NA other downstream 3086379 35439289 ~ 35484354 (+)
G1732735 NA other downstream 3688421 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 3880212 36189389 ~ 36237829 (+)

Expression


Co-expression Network