G1728132


Basic Information

Item Value
gene id G1728132
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32354036 ~ 32356561 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1979489
gttcgctagagagcatttggatgatccagaagaagattgggagaatgtcatatggtcagatgaaaccaaaatataactttttggtaaaaactcaactcgtcgtgtttggaggacaaagaatgctgagttgcatccaaagaacaccatacctactgtgaagcatgagggtggaaacatcatgctttggagctgtttttctgcaaagggaccaggacgactgatccgtgtaaaggaaagaatgaatagggc

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1979489 True 249 lncRNA 0.43 2 32354036 32356561

Neighbor

gene id symbol gene type direction distance location
LOC110500258 LOC106609138 coding upstream 10478 32310043 ~ 32343558 (+)
vatf LOC106609141 coding upstream 92561 32257480 ~ 32261475 (+)
arf4 LOC106609140 coding upstream 99738 32250622 ~ 32254298 (+)
LOC110500255 LOC106609093 coding upstream 119295 32231148 ~ 32234741 (+)
LOC110501065 LOC106609145 coding upstream 136242 32189542 ~ 32217794 (+)
LOC110500259 LOC106609137 coding downstream 8959 32365520 ~ 32395907 (+)
LOC110500261 irf5 coding downstream 53311 32409872 ~ 32420565 (+)
LOC100135983 opn1sw coding downstream 99560 32456121 ~ 32458130 (+)
LOC110500263 LOC106609128 coding downstream 117420 32473981 ~ 32494341 (+)
LOC110500266 LOC106609126 coding downstream 166211 32522772 ~ 32531043 (+)
G1728131 NA non-coding upstream 1126 32352626 ~ 32352910 (+)
G1728115 NA non-coding upstream 24474 32329294 ~ 32329562 (+)
G1728114 NA non-coding upstream 25040 32328782 ~ 32328996 (+)
G1728112 NA non-coding upstream 27747 32326034 ~ 32326289 (+)
G1728111 NA non-coding upstream 28146 32325598 ~ 32325890 (+)
G1728188 LOC106609130 non-coding downstream 101731 32458292 ~ 32462718 (+)
G1728191 NA non-coding downstream 108641 32465202 ~ 32468500 (+)
G1728170 NA non-coding downstream 138049 32494610 ~ 32495559 (+)
G1728252 NA non-coding downstream 288233 32644794 ~ 32645016 (+)
G1728259 NA non-coding downstream 298828 32655389 ~ 32655594 (+)
LOC110500252 LOC106609149 other upstream 191644 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 217340 32114413 ~ 32144886 (+)
G1727220 NA other upstream 789442 31564135 ~ 31564594 (+)
G1727181 NA other upstream 845664 31508056 ~ 31508372 (+)
G1727146 NA other upstream 903919 31449396 ~ 31450117 (+)
G1729465 NA other downstream 964892 33321453 ~ 33321761 (+)
LOC110500285 fam19a5 other downstream 1353531 33709461 ~ 33869016 (+)
G1732028 NA other downstream 3082728 35439289 ~ 35484354 (+)
G1732735 NA other downstream 3684770 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 3876561 36189389 ~ 36237829 (+)

Expression


Co-expression Network