G1728188 (LOC106609130)


Basic Information

Item Value
gene id G1728188
gene name LOC106609130
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32458292 ~ 32462718 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1979562
GGCTGTGGAATCCAAAGTACAGCATTTAATCCAAAAGATGAATGTCCATACATTCTATGTAtaaactcagaaaataaaacaCTTGCCAAGTATGTACATACTTCAATATAATCTTAATTTAGGGCAAGCGGAATTCAGTAACAACGCTGCAATGCACCAACCTTTCAGTTCAGCATGCCCCATAGAAAGGAAGTACAACCGCTTTTATTTCTAACCAATAGAACAGATGCTTTCTCACATGTGTGCTGGTTCTCAATAGTCTAAAATGGTTTCCTTTTGTTTCACATTGGTCATCCAACATGTTTCTTTCACCTATCATTTGTTTCTAGATCAGTGCAgatggagacaaggagaggaagccactgCAGACTATTGAGAGGGAGTGATTGACAGGAGAAAAGGCTACAGAAGCAGTGATGAACTTGGCAACATTGTAATAACAACCCTAGTCATGACAGacaaatacagtacatatgaaGAAGAGGGGGGTCAAAGTGAGTGTTTATGGAGAAACAGAGCAGGGTGAGGGATGACTTCACTGTAGTGGACTCACGTTCCCATGACCCTCTGATATTTAGTGTCGGTTTCATTGGTTGAGCTCCCAAAAGACTACTCAGAGAAGGCACACACTGGGTAAAAGGATACGTATGAGGCTAACGTCGGTTAGCATCTCTTATCTACTAACTATACTAAGAAATTATGGGCTATCATTACAATCAGTGTCATTCAAAACATGACTGTAAAAAACACCAAATAATTCCCACATATGAAGGGTTTGTTGGAAGAATTATAAATTATTACAACTCCAAATGGAATATTCAGTGCTTGTGAGTATAGCATCATATTTTAAACAAAGGCAAAAATAATGACCAAACTAAACTACCTATGTTTGTAACGGAACAATAAAATGAAGTGTTGGGATGGGTAGTCAGTAAATATAACACCCACGCAACTATTGAGTGCTATCAACCACAAACTAATTGGAGACGTAGTGTATGAATAGGTGTCGTACAAAGTACATTTGATCATTTATCAAATCAAGTTTAAAACTGTTTTATCTAGCTAGGACCAAATAACCTAAAACTCATCATGCCTGGTCGTAATCTGAAGGAAGGATCCAGTCCAAAGTCTCCTCCCGATCCATCTTCCCGTCTTTGTTCTTGTCTCGGAACTCTGAAAACTGCTCACGCTCCGTAGCAACCCAGTCTGGCTCCTCCATCTCATCTTCATGGTTGTACATGTCACCTAGGAAACGAGGGGGATGAAA
>TU1979563
GGCTGTGGAATCCAAAGTACAGCATTTAATCCAAAAGATGAATGTCCATACATTCTATGTAtaaactcagaaaataaaacaCTTGCCAAGTATGTACATACTTCAATATAATCTTAATTTAGGGCAAGCGGAATTCAGTAACAACGCTGCAATGCACCAACCTTTCAGTTCAGCATGCCCCATAGAAAGGAAGTACAACCGCTTTTATTTCTAACCAATAGAACAGATGCTTTCTCACATGTGTGCTGGTTCTCAATAGTCTAAAATGGTTTCCTTTTGTTTCACATTGGTCATCCAACATGTTTCTTTCACCTATCATTTGTTTCTAGATCAGTGCAgatggagacaaggagaggaagccactgCAGACTATTGAGAGGGAGTGATTGACAGGAGAAAAGGCTACAGAAGCAGTGATGAACTTGGCAACATTGTAATAACAACCCTAGTCATGACAGacaaatacagtacatatgaaGAAGAGGGGGGTCAAAGTGAGTGTTTATGGAGAAACAGAGCAGGGTGAGGGATGACTTCACTGTAGTGGACTCACGTTCCCATGACCCTCTGATATTTAGTGTCGGTTTCATTGGTTGAGCTCCCAAAAGACTACTCAGAGAAGGCACACACTGGGTAAAAGGATACGTATGAGGCTAACGTCGGTTAGCATCTCTTATCTACTAACTATACTAAGAAATTATGGGCTATCATTACAATCAGTGTCATTCAAAACATGACTGTAAAAAACACCAAATAATTCCCACATATGAAGGGTTTGTTGGAAGAATTATAAATTATTACAACTCCAAATGGAATATTCAGTGCTTGTGAGTATAGCATCATATTTTAAACAAAGGCAAAAATAATGACCAAACTAAACTACCTATGTTTGTAACGGAACAATAAAATGAAGTGTTGGGATGGGTAGTCAGTAAATATAACACCCACGCAACTATTGAGTGCTATCAACCACAAACTAATTGGAGACGTAGTGTATGAATAGGTGTCGTACAAAGTACATTTGATCATTTATCAAATCAAGTTTAAAACTGTTTTATCTAGCTAGGACCAAATAACCTAAAACTCATCATGCCTGGTCGTAATCTGAAGGAAGGATCCAGTCCAAAGTCTCCTCCCGATCCATCTTCCCGTCTTTGTTCTTGTCTCGGAACTCTGAAAACTGCTCACGCTCCGTAGCAACCCAGTCTGGCTCCTCCATCTCATCTTCATGGTTGTACATGTCACCTATGTATTCATTCAGGTCAATGAAACCATCACCATTCTTATCAATGTCCTCCATGGTTTCCAGCACCACTATGTCCTTCATGTGGTCGTACTCCTCTGGGTGTAGGAAGGCTGTGAACTCCTCTTTGTTGGCGATTTGGTCTCCGTTCTGGTCGGCCATTTTGAAACGCCTCTCGTCCCTCGCCATCATGTGCTGGTAGTTGTAACCATCATCTGGTTCCGGGTCATCTGTATTCCTCCCAAGAAATCATGCCGTCATTGTTGACATCAAAGTCCTTCCATTGGCGGTCCACGTTCTCATAGATGTACTTCTTCTGAGCCTTCTTAATCCACGCTCTCAGCTCAACCTCAGTGACAAAACCATCACTGTCCCCATCAATCTTCTCTACA

Function

NR:

description
calumenin-A isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1979562 False 1267 lncRNA 0.39 2 32458292 32459809
TU1979563 True 1635 lncRNA 0.41 5 32458292 32462718

Neighbor

gene id symbol gene type direction distance location
LOC100135983 opn1sw coding upstream 162 32456121 ~ 32458130 (+)
LOC110500261 irf5 coding upstream 37727 32409872 ~ 32420565 (+)
LOC110500259 LOC106609137 coding upstream 62385 32365520 ~ 32395907 (+)
LOC110500258 LOC106609138 coding upstream 114734 32310043 ~ 32343558 (+)
vatf LOC106609141 coding upstream 196817 32257480 ~ 32261475 (+)
LOC110500263 LOC106609128 coding downstream 11263 32473981 ~ 32494341 (+)
LOC110500266 LOC106609126 coding downstream 60054 32522772 ~ 32531043 (+)
LOC110500265 NA coding downstream 68478 32531196 ~ 32553744 (+)
LOC110500267 LOC106576021 coding downstream 97832 32560550 ~ 32568416 (+)
LOC118943022 NA coding downstream 101994 32564712 ~ 32564944 (+)
G1728132 NA non-coding upstream 101731 32354036 ~ 32356561 (+)
G1728131 NA non-coding upstream 105382 32352626 ~ 32352910 (+)
G1728115 NA non-coding upstream 128730 32329294 ~ 32329562 (+)
G1728114 NA non-coding upstream 129296 32328782 ~ 32328996 (+)
G1728112 NA non-coding upstream 132003 32326034 ~ 32326289 (+)
G1728191 NA non-coding downstream 2484 32465202 ~ 32468500 (+)
G1728170 NA non-coding downstream 31892 32494610 ~ 32495559 (+)
G1728252 NA non-coding downstream 182076 32644794 ~ 32645016 (+)
G1728259 NA non-coding downstream 192671 32655389 ~ 32655594 (+)
G1728260 NA non-coding downstream 193067 32655785 ~ 32655993 (+)
LOC110500252 LOC106609149 other upstream 295900 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 321596 32114413 ~ 32144886 (+)
G1727220 NA other upstream 893698 31564135 ~ 31564594 (+)
G1727181 NA other upstream 949920 31508056 ~ 31508372 (+)
G1727146 NA other upstream 1008175 31449396 ~ 31450117 (+)
G1729465 NA other downstream 858735 33321453 ~ 33321761 (+)
LOC110500285 fam19a5 other downstream 1247374 33709461 ~ 33869016 (+)
G1732028 NA other downstream 2976571 35439289 ~ 35484354 (+)
G1732735 NA other downstream 3578613 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 3770404 36189389 ~ 36237829 (+)

Expression


Co-expression Network