G1728170


Basic Information

Item Value
gene id G1728170
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32494610 ~ 32495559 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1979543
GGCcttatatggatgttacattttactttatgagttggttatgtaggcttcttctaacccatcgctttctactacatataaaacgattaaattatatatttacattaaaaaacagtctatcagaattccagtcaatCCAATAGATGTTATACCCATtaatcttcaagaataggacttggaaatatagaagtatagattagccaaatggttttacctgagcataaccccaaaacgaaggacttattagccagcccaatgttgtttattttgttgtcatggaggactgattcgAGCTGAAAATAAATAATGCGCTCATGGAAttgcatgctttgagcactacagAAAAGTGCTAAATGAATGCCATAtactgcatttgctataggcctgttGGTTAACTTTTTttgtgacactttgatatcttgataatatgcagctgtttaaagggcaaatccacagatgaaactgCCTTCtcagcagagttgcaaagaaaaagccatatctcagactggccaaaaaaaagaaaagattaagatgtgcaaaggacacagacactggacagaggaactttgcctagaatgccagcatcccagagtcacctcttcactgttgatccagtttgagctgttctgtaaAGCGACAAGTACacagcggcagggtagcctagtggtgagagtgttggactagtaaccgaaaggttgcaagttcaaatccccaagctgacaaggtacaaatctgttgttctacccctgaacaggcagttaactcactgttcttaggacgtcattgaaaataagaatatgttcttaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1979543 True 807 lncRNA 0.38 2 32494610 32495559

Neighbor

gene id symbol gene type direction distance location
LOC110500263 LOC106609128 coding upstream 269 32473981 ~ 32494341 (+)
LOC100135983 opn1sw coding upstream 36480 32456121 ~ 32458130 (+)
LOC110500261 irf5 coding upstream 74045 32409872 ~ 32420565 (+)
LOC110500259 LOC106609137 coding upstream 98703 32365520 ~ 32395907 (+)
LOC110500258 LOC106609138 coding upstream 151052 32310043 ~ 32343558 (+)
LOC110500266 LOC106609126 coding downstream 27213 32522772 ~ 32531043 (+)
LOC110500265 NA coding downstream 35637 32531196 ~ 32553744 (+)
LOC110500267 LOC106576021 coding downstream 64991 32560550 ~ 32568416 (+)
LOC118943022 NA coding downstream 69153 32564712 ~ 32564944 (+)
LOC110500268 LOC106609123 coding downstream 75185 32570744 ~ 32585663 (+)
G1728191 NA non-coding upstream 26110 32465202 ~ 32468500 (+)
G1728188 LOC106609130 non-coding upstream 31892 32458292 ~ 32462718 (+)
G1728132 NA non-coding upstream 138049 32354036 ~ 32356561 (+)
G1728131 NA non-coding upstream 141700 32352626 ~ 32352910 (+)
G1728115 NA non-coding upstream 165048 32329294 ~ 32329562 (+)
G1728252 NA non-coding downstream 149235 32644794 ~ 32645016 (+)
G1728259 NA non-coding downstream 159830 32655389 ~ 32655594 (+)
G1728260 NA non-coding downstream 160226 32655785 ~ 32655993 (+)
G1728265 NA non-coding downstream 166490 32662049 ~ 32662256 (+)
G1728269 NA non-coding downstream 172052 32667611 ~ 32667979 (+)
LOC110500252 LOC106609149 other upstream 332218 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 357914 32114413 ~ 32144886 (+)
G1727220 NA other upstream 930016 31564135 ~ 31564594 (+)
G1727181 NA other upstream 986238 31508056 ~ 31508372 (+)
G1727146 NA other upstream 1044493 31449396 ~ 31450117 (+)
G1729465 NA other downstream 825894 33321453 ~ 33321761 (+)
LOC110500285 fam19a5 other downstream 1214533 33709461 ~ 33869016 (+)
G1732028 NA other downstream 2943730 35439289 ~ 35484354 (+)
G1732735 NA other downstream 3545772 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 3737563 36189389 ~ 36237829 (+)

Expression


Co-expression Network