G1728252


Basic Information

Item Value
gene id G1728252
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32644794 ~ 32645016 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1979630
GTTCcctatgcacaaaaagcttatttctctcaaatttttggcacaaatttgtttacatccctgttagtgagattttctcctttgccaagataatccatccacctgacaggtgtggcatatcaaaaagctgattaaacagcatgatcattacccaggtgcaccttgtgctggggacaaaacaccactctaaaatgtgccgttttgtcacacaacacaatgccac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1979630 True 223 lncRNA 0.41 1 32644794 32645016

Neighbor

gene id symbol gene type direction distance location
LOC110500271 LOC106576017 coding upstream 8558 32613167 ~ 32636236 (+)
LOC110500270 LOC106566433 coding upstream 41902 32594388 ~ 32602892 (+)
LOC110500268 LOC106609123 coding upstream 59131 32570744 ~ 32585663 (+)
LOC110500267 LOC106576021 coding upstream 76378 32560550 ~ 32568416 (+)
LOC118943022 NA coding upstream 79850 32564712 ~ 32564944 (+)
LOC110500277 LOC106609118 coding downstream 49201 32694217 ~ 32756092 (+)
LOC110500276 LOC106609116 coding downstream 122979 32767995 ~ 32792331 (+)
LOC110500278 LOC106609115 coding downstream 148194 32793210 ~ 32834958 (+)
LOC110500279 LOC106609114 coding downstream 196773 32841789 ~ 32957803 (+)
LOC110500281 trmu coding downstream 405459 33050475 ~ 33053507 (+)
G1728170 NA non-coding upstream 149235 32494610 ~ 32495559 (+)
G1728191 NA non-coding upstream 176294 32465202 ~ 32468500 (+)
G1728188 LOC106609130 non-coding upstream 182076 32458292 ~ 32462718 (+)
G1728132 NA non-coding upstream 288233 32354036 ~ 32356561 (+)
G1728131 NA non-coding upstream 291884 32352626 ~ 32352910 (+)
G1728259 NA non-coding downstream 10373 32655389 ~ 32655594 (+)
G1728260 NA non-coding downstream 10769 32655785 ~ 32655993 (+)
G1728265 NA non-coding downstream 17033 32662049 ~ 32662256 (+)
G1728269 NA non-coding downstream 22595 32667611 ~ 32667979 (+)
G1728542 NA non-coding downstream 487545 33132561 ~ 33150958 (+)
LOC110500252 LOC106609149 other upstream 482402 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 508098 32114413 ~ 32144886 (+)
G1727220 NA other upstream 1080200 31564135 ~ 31564594 (+)
G1727181 NA other upstream 1136422 31508056 ~ 31508372 (+)
G1727146 NA other upstream 1194677 31449396 ~ 31450117 (+)
G1729465 NA other downstream 676437 33321453 ~ 33321761 (+)
LOC110500285 fam19a5 other downstream 1065076 33709461 ~ 33869016 (+)
G1732028 NA other downstream 2794273 35439289 ~ 35484354 (+)
G1732735 NA other downstream 3396315 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 3588106 36189389 ~ 36237829 (+)

Expression


Co-expression Network