G1728542


Basic Information

Item Value
gene id G1728542
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 33132561 ~ 33150958 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1979949
actctgcagccgtcttcattgacctggccaaggctttcgactctgtcaatattcttatcggcagactcagtagcctctgtttttctaatgactgccttgcctggttcaccaactactttgcagacagagttcagtgtgtcaaatcggagggcatgttgtccagtcctctggcagtctctatgggggtgccacagggttcaattctcgggccgactcttttctctCTATCAATGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1979949 True 234 lncRNA 0.50 2 33132561 33150958

Neighbor

gene id symbol gene type direction distance location
LOC110500281 trmu coding upstream 79054 33050475 ~ 33053507 (+)
LOC110500279 LOC106609114 coding upstream 174758 32841789 ~ 32957803 (+)
LOC110500278 LOC106609115 coding upstream 297603 32793210 ~ 32834958 (+)
LOC110500276 LOC106609116 coding upstream 340230 32767995 ~ 32792331 (+)
LOC110500277 LOC106609118 coding upstream 376469 32694217 ~ 32756092 (+)
LOC110500282 LOC106609111 coding downstream 29716 33180674 ~ 33253523 (+)
LOC110500284 LOC106609109 coding downstream 178969 33329927 ~ 33515988 (+)
LOC110500285 fam19a5 coding downstream 558503 33709461 ~ 33869016 (+)
LOC110500288 LOC106609107 coding downstream 1158141 34309099 ~ 34317797 (+)
LOC100135927 LOC106609106 coding downstream 1174252 34325210 ~ 34329578 (+)
G1728269 NA non-coding upstream 464582 32667611 ~ 32667979 (+)
G1728265 NA non-coding upstream 470305 32662049 ~ 32662256 (+)
G1728260 NA non-coding upstream 476568 32655785 ~ 32655993 (+)
G1728259 NA non-coding upstream 476967 32655389 ~ 32655594 (+)
G1728252 NA non-coding upstream 487545 32644794 ~ 32645016 (+)
G1729333 NA non-coding downstream 113936 33264894 ~ 33265132 (+)
G1729338 NA non-coding downstream 119668 33270626 ~ 33270856 (+)
G1729344 NA non-coding downstream 125089 33276047 ~ 33276267 (+)
G1729348 NA non-coding downstream 133733 33284691 ~ 33285245 (+)
LOC110500252 LOC106609149 other upstream 970169 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 995865 32114413 ~ 32144886 (+)
G1727220 NA other upstream 1567967 31564135 ~ 31564594 (+)
G1727181 NA other upstream 1624189 31508056 ~ 31508372 (+)
G1727146 NA other upstream 1682444 31449396 ~ 31450117 (+)
G1729465 NA other downstream 170495 33321453 ~ 33321761 (+)
G1732028 NA other downstream 2288331 35439289 ~ 35484354 (+)
G1732735 NA other downstream 2890373 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 3082164 36189389 ~ 36237829 (+)

Expression


Co-expression Network