G1729333


Basic Information

Item Value
gene id G1729333
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 33264894 ~ 33265132 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1980812
GTTAGGTTATGCTAATTAGGGATATTTTAATGCTGTATGGAGGTGGTAGAGAGCTGTAGCCAAGGCACTTCCAAGTCTGGAGAGATATGAGTTTATTACAGTACAAGGGGCAGGCAATCGgtaggtcaaggcaggcaaagagtcgtaatcagagtcaggcaggtacaggaagGCAAGCAggatcaggacaggcagaaaggtcagaactgggaagacGAGGAAAAGCAAAAACTAGAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1980812 True 239 lncRNA 0.47 1 33264894 33265132

Neighbor

gene id symbol gene type direction distance location
LOC110500282 LOC106609111 coding upstream 11371 33180674 ~ 33253523 (+)
LOC110501067 LOC106609112 coding upstream 98203 33054060 ~ 33166691 (+)
LOC110500281 trmu coding upstream 211387 33050475 ~ 33053507 (+)
LOC110500279 LOC106609114 coding upstream 307091 32841789 ~ 32957803 (+)
LOC110500278 LOC106609115 coding upstream 429936 32793210 ~ 32834958 (+)
LOC110500284 LOC106609109 coding downstream 64795 33329927 ~ 33515988 (+)
LOC110500285 fam19a5 coding downstream 444329 33709461 ~ 33869016 (+)
LOC110500288 LOC106609107 coding downstream 1043967 34309099 ~ 34317797 (+)
LOC100135927 LOC106609106 coding downstream 1060078 34325210 ~ 34329578 (+)
LOC110500293 LOC106609102 coding downstream 1501588 34766720 ~ 34782583 (+)
G1728542 NA non-coding upstream 113936 33132561 ~ 33150958 (+)
G1728269 NA non-coding upstream 596915 32667611 ~ 32667979 (+)
G1728265 NA non-coding upstream 602638 32662049 ~ 32662256 (+)
G1728260 NA non-coding upstream 608901 32655785 ~ 32655993 (+)
G1729338 NA non-coding downstream 5494 33270626 ~ 33270856 (+)
G1729344 NA non-coding downstream 10915 33276047 ~ 33276267 (+)
G1729348 NA non-coding downstream 19559 33284691 ~ 33285245 (+)
G1729352 NA non-coding downstream 28576 33293708 ~ 33293947 (+)
G1729359 NA non-coding downstream 44392 33309524 ~ 33309744 (+)
LOC110500252 LOC106609149 other upstream 1102502 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 1128198 32114413 ~ 32144886 (+)
G1727220 NA other upstream 1700300 31564135 ~ 31564594 (+)
G1727181 NA other upstream 1756522 31508056 ~ 31508372 (+)
G1727146 NA other upstream 1814777 31449396 ~ 31450117 (+)
G1729465 NA other downstream 56321 33321453 ~ 33321761 (+)
G1732028 NA other downstream 2174157 35439289 ~ 35484354 (+)
G1732735 NA other downstream 2776199 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 2967990 36189389 ~ 36237829 (+)

Expression


Co-expression Network