G1729338


Basic Information

Item Value
gene id G1729338
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 33270626 ~ 33270856 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1980817
catcctgactggttgcatcactgcctggtatggcaactgctcggcctccaaccaaaaggcactacagagggtaatgcgtatggcccagtatatcactggggccaagcttcctgccatccaggacttctataccaggcggtgtcagaggaaggccctaaaaattgccaaagactccagccacccttgtcatagactggtctctctgctactgcatggcaagcagtaccggag

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1980817 True 231 lncRNA 0.54 1 33270626 33270856

Neighbor

gene id symbol gene type direction distance location
LOC110500282 LOC106609111 coding upstream 17103 33180674 ~ 33253523 (+)
LOC110501067 LOC106609112 coding upstream 103935 33054060 ~ 33166691 (+)
LOC110500281 trmu coding upstream 217119 33050475 ~ 33053507 (+)
LOC110500279 LOC106609114 coding upstream 312823 32841789 ~ 32957803 (+)
LOC110500278 LOC106609115 coding upstream 435668 32793210 ~ 32834958 (+)
LOC110500284 LOC106609109 coding downstream 59071 33329927 ~ 33515988 (+)
LOC110500285 fam19a5 coding downstream 438605 33709461 ~ 33869016 (+)
LOC110500288 LOC106609107 coding downstream 1038243 34309099 ~ 34317797 (+)
LOC100135927 LOC106609106 coding downstream 1054354 34325210 ~ 34329578 (+)
LOC110500293 LOC106609102 coding downstream 1495864 34766720 ~ 34782583 (+)
G1729333 NA non-coding upstream 5494 33264894 ~ 33265132 (+)
G1728542 NA non-coding upstream 119668 33132561 ~ 33150958 (+)
G1728269 NA non-coding upstream 602647 32667611 ~ 32667979 (+)
G1728265 NA non-coding upstream 608370 32662049 ~ 32662256 (+)
G1729344 NA non-coding downstream 5191 33276047 ~ 33276267 (+)
G1729348 NA non-coding downstream 13835 33284691 ~ 33285245 (+)
G1729352 NA non-coding downstream 22852 33293708 ~ 33293947 (+)
G1729359 NA non-coding downstream 38668 33309524 ~ 33309744 (+)
G1729462 NA non-coding downstream 47968 33318824 ~ 33319046 (+)
LOC110500252 LOC106609149 other upstream 1108234 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 1133930 32114413 ~ 32144886 (+)
G1727220 NA other upstream 1706032 31564135 ~ 31564594 (+)
G1727181 NA other upstream 1762254 31508056 ~ 31508372 (+)
G1727146 NA other upstream 1820509 31449396 ~ 31450117 (+)
G1729465 NA other downstream 50597 33321453 ~ 33321761 (+)
G1732028 NA other downstream 2168433 35439289 ~ 35484354 (+)
G1732735 NA other downstream 2770475 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 2962266 36189389 ~ 36237829 (+)

Expression


Co-expression Network