G1729462


Basic Information

Item Value
gene id G1729462
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 33318824 ~ 33319046 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1980941
Gtatgtacctgtacacagccaatctgtaaatagcacaaccattcaactacctcatccccatattattacttaccctcttgctattttgcaccccagtatctctacttgcacatcatcatctgcacatctatcactccagtattaatgctaaattgtaattatttcgccaaaatggccaatttattgcctacctccctactcttctacgcttgcacacactgta

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1980941 True 223 lncRNA 0.40 1 33318824 33319046

Neighbor

gene id symbol gene type direction distance location
LOC110500282 LOC106609111 coding upstream 65301 33180674 ~ 33253523 (+)
LOC110501067 LOC106609112 coding upstream 152133 33054060 ~ 33166691 (+)
LOC110500281 trmu coding upstream 265317 33050475 ~ 33053507 (+)
LOC110500279 LOC106609114 coding upstream 361021 32841789 ~ 32957803 (+)
LOC110500278 LOC106609115 coding upstream 483866 32793210 ~ 32834958 (+)
LOC110500284 LOC106609109 coding downstream 10881 33329927 ~ 33515988 (+)
LOC110500285 fam19a5 coding downstream 390415 33709461 ~ 33869016 (+)
LOC110500288 LOC106609107 coding downstream 990053 34309099 ~ 34317797 (+)
LOC100135927 LOC106609106 coding downstream 1006164 34325210 ~ 34329578 (+)
LOC110500293 LOC106609102 coding downstream 1447674 34766720 ~ 34782583 (+)
G1729359 NA non-coding upstream 9080 33309524 ~ 33309744 (+)
G1729352 NA non-coding upstream 24877 33293708 ~ 33293947 (+)
G1729348 NA non-coding upstream 33579 33284691 ~ 33285245 (+)
G1729344 NA non-coding upstream 42557 33276047 ~ 33276267 (+)
G1729338 NA non-coding upstream 47968 33270626 ~ 33270856 (+)
G1729577 NA non-coding downstream 154789 33473835 ~ 33474330 (+)
G1729617 NA non-coding downstream 216831 33535877 ~ 33536136 (+)
G1729769 NA non-coding downstream 220898 33539944 ~ 33540150 (+)
G1729781 NA non-coding downstream 226432 33545478 ~ 33545693 (+)
G1729782 NA non-coding downstream 226854 33545900 ~ 33546114 (+)
LOC110500252 LOC106609149 other upstream 1156432 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 1182128 32114413 ~ 32144886 (+)
G1727220 NA other upstream 1754230 31564135 ~ 31564594 (+)
G1727181 NA other upstream 1810452 31508056 ~ 31508372 (+)
G1727146 NA other upstream 1868707 31449396 ~ 31450117 (+)
G1729465 NA other downstream 2407 33321453 ~ 33321761 (+)
G1732028 NA other downstream 2120243 35439289 ~ 35484354 (+)
G1732735 NA other downstream 2722285 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 2914076 36189389 ~ 36237829 (+)

Expression


Co-expression Network