G1729577



Basic Information


Item Value
gene id G1729577
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 33473835 ~ 33474330 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1981061
TATTTCTCACCACATGTCCGCTGCAGAGGAACAAgcgagagccatgagaaaaccaTTTGTGCTCAGTCATGGAAAtgagtgctgaaaacaaattggctctctatttaaaaaaaagaaaaagaaaaaaggaGAACAAGCtgtgaaggaaaaatactggagttttggtacGATAATGTCAAAAACGATACGATGTAtggtcaaaaataatatcccgatatgttACCGTATACATTTTTGCCCCCCATCACTACTGCTACACCGCTCCATTGTAAAGAGCCCCAAAGGCAGGGAGGTAGATTCCCTCCTCTAGAACTATTCCTATGTGTGTTGTTGTCGAGCAATAGGCCTATTTGGCAGGGAAACTGTGAAGCGAGCTGTGGCCAATTGCTTGTTTctgtttgttttctgttttgttttcttTAATAAAAGACGCAATGTTGTCCGTTTGCTGCTTTTCATGAAATCATGCGTAC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1981061 True 473 lncRNA 0.41 2 33473835 33474330

Neighbor


gene id symbol gene type direction distance location
LOC110500282 LOC106609111 coding upstream 220312 33180674 ~ 33253523 (+)
LOC110501067 LOC106609112 coding upstream 307144 33054060 ~ 33166691 (+)
LOC110500281 trmu coding upstream 420328 33050475 ~ 33053507 (+)
LOC110500279 LOC106609114 coding upstream 516032 32841789 ~ 32957803 (+)
LOC110500278 LOC106609115 coding upstream 638877 32793210 ~ 32834958 (+)
LOC110500285 fam19a5 coding downstream 235131 33709461 ~ 33869016 (+)
LOC110500288 LOC106609107 coding downstream 834769 34309099 ~ 34317797 (+)
LOC100135927 LOC106609106 coding downstream 850880 34325210 ~ 34329578 (+)
LOC110500293 LOC106609102 coding downstream 1292390 34766720 ~ 34782583 (+)
LOC118942784 NA coding downstream 1310083 34784413 ~ 34792564 (+)
G1729462 NA non-coding upstream 154789 33318824 ~ 33319046 (+)
G1729359 NA non-coding upstream 164091 33309524 ~ 33309744 (+)
G1729352 NA non-coding upstream 179888 33293708 ~ 33293947 (+)
G1729348 NA non-coding upstream 188590 33284691 ~ 33285245 (+)
G1729344 NA non-coding upstream 197568 33276047 ~ 33276267 (+)
G1729617 NA non-coding downstream 61547 33535877 ~ 33536136 (+)
G1729769 NA non-coding downstream 65614 33539944 ~ 33540150 (+)
G1729781 NA non-coding downstream 71148 33545478 ~ 33545693 (+)
G1729782 NA non-coding downstream 71570 33545900 ~ 33546114 (+)
G1729788 NA non-coding downstream 78647 33552977 ~ 33553203 (+)
G1729465 NA other upstream 152074 33321453 ~ 33321761 (+)
LOC110500252 LOC106609149 other upstream 1311443 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 1337139 32114413 ~ 32144886 (+)
G1727220 NA other upstream 1909241 31564135 ~ 31564594 (+)
G1727181 NA other upstream 1965463 31508056 ~ 31508372 (+)
G1732028 NA other downstream 1964959 35439289 ~ 35484354 (+)
G1732735 NA other downstream 2567001 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 2758792 36189389 ~ 36237829 (+)
G1733187 NA other downstream 3282659 36756989 ~ 36760221 (+)

Expression



Co-expression Network