G1729782


Basic Information

Item Value
gene id G1729782
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 33545900 ~ 33546114 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1981280
CTCTTTGTACAGTATATCTATTTCTGTATTCCTTGTGCTCATTCACTTTACCAAACCAGCTATAGCTTCAATTGCTTACAGCTAATGCATTACTGAGTACATGGACATTCATAACCTACGACCTTTAGCAATATGCTAATGCATCCTAGCTGACACATCATGAAATTACATAAACGAATCATAGCCATCATTAACAAGGCAACATCTCTGTAGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1981280 True 215 lncRNA 0.37 1 33545900 33546114

Neighbor

gene id symbol gene type direction distance location
LOC110500284 LOC106609109 coding upstream 29912 33329927 ~ 33515988 (+)
LOC110500282 LOC106609111 coding upstream 292377 33180674 ~ 33253523 (+)
LOC110501067 LOC106609112 coding upstream 379209 33054060 ~ 33166691 (+)
LOC110500281 trmu coding upstream 492393 33050475 ~ 33053507 (+)
LOC110500279 LOC106609114 coding upstream 588097 32841789 ~ 32957803 (+)
LOC110500285 fam19a5 coding downstream 163347 33709461 ~ 33869016 (+)
LOC110500288 LOC106609107 coding downstream 762985 34309099 ~ 34317797 (+)
LOC100135927 LOC106609106 coding downstream 779096 34325210 ~ 34329578 (+)
LOC110500293 LOC106609102 coding downstream 1220606 34766720 ~ 34782583 (+)
LOC118942784 NA coding downstream 1238299 34784413 ~ 34792564 (+)
G1729781 NA non-coding upstream 207 33545478 ~ 33545693 (+)
G1729769 NA non-coding upstream 5750 33539944 ~ 33540150 (+)
G1729617 NA non-coding upstream 9764 33535877 ~ 33536136 (+)
G1729577 NA non-coding upstream 71570 33473835 ~ 33474330 (+)
G1729462 NA non-coding upstream 226854 33318824 ~ 33319046 (+)
G1729788 NA non-coding downstream 6863 33552977 ~ 33553203 (+)
G1729789 NA non-coding downstream 7110 33553224 ~ 33553486 (+)
G1729803 NA non-coding downstream 17748 33563862 ~ 33564130 (+)
G1729837 NA non-coding downstream 63574 33609688 ~ 33609995 (+)
G1729865 NA non-coding downstream 92137 33638251 ~ 33643212 (+)
G1729465 NA other upstream 224139 33321453 ~ 33321761 (+)
LOC110500252 LOC106609149 other upstream 1383508 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 1409204 32114413 ~ 32144886 (+)
G1727220 NA other upstream 1981306 31564135 ~ 31564594 (+)
G1727181 NA other upstream 2037528 31508056 ~ 31508372 (+)
G1732028 NA other downstream 1893175 35439289 ~ 35484354 (+)
G1732735 NA other downstream 2495217 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 2687008 36189389 ~ 36237829 (+)
G1733187 NA other downstream 3210875 36756989 ~ 36760221 (+)

Expression


Co-expression Network