G1729789


Basic Information

Item Value
gene id G1729789
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 33553224 ~ 33553486 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1981287
GAATGGGGAAaaaaaccttcctaatattgttgcatcctctcagaacagcctcaattcgacAGGGCATGGACACTacgaggtgtcgaaagcgttccacagtaatgctggcccatgttgacttcaattctacccacagttgtgtcaagttgtctggatgtggtggaccattcttgatacacacaggaaattgttgaggttgaaaaacccagcagtgttgcagttcttgacacaagctGGTGCCCCTCGaactactaccatacccg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1981287 True 263 lncRNA 0.47 1 33553224 33553486

Neighbor

gene id symbol gene type direction distance location
LOC110500284 LOC106609109 coding upstream 37236 33329927 ~ 33515988 (+)
LOC110500282 LOC106609111 coding upstream 299701 33180674 ~ 33253523 (+)
LOC110501067 LOC106609112 coding upstream 386533 33054060 ~ 33166691 (+)
LOC110500281 trmu coding upstream 499717 33050475 ~ 33053507 (+)
LOC110500279 LOC106609114 coding upstream 595421 32841789 ~ 32957803 (+)
LOC110500285 fam19a5 coding downstream 155975 33709461 ~ 33869016 (+)
LOC110500288 LOC106609107 coding downstream 755613 34309099 ~ 34317797 (+)
LOC100135927 LOC106609106 coding downstream 771724 34325210 ~ 34329578 (+)
LOC110500293 LOC106609102 coding downstream 1213234 34766720 ~ 34782583 (+)
LOC118942784 NA coding downstream 1230927 34784413 ~ 34792564 (+)
G1729788 NA non-coding upstream 21 33552977 ~ 33553203 (+)
G1729782 NA non-coding upstream 7110 33545900 ~ 33546114 (+)
G1729781 NA non-coding upstream 7531 33545478 ~ 33545693 (+)
G1729769 NA non-coding upstream 13074 33539944 ~ 33540150 (+)
G1729617 NA non-coding upstream 17088 33535877 ~ 33536136 (+)
G1729803 NA non-coding downstream 10376 33563862 ~ 33564130 (+)
G1729837 NA non-coding downstream 56202 33609688 ~ 33609995 (+)
G1729865 NA non-coding downstream 84765 33638251 ~ 33643212 (+)
G1729923 NA non-coding downstream 105117 33658603 ~ 33658826 (+)
G1729465 NA other upstream 231463 33321453 ~ 33321761 (+)
LOC110500252 LOC106609149 other upstream 1390832 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 1416528 32114413 ~ 32144886 (+)
G1727220 NA other upstream 1988630 31564135 ~ 31564594 (+)
G1727181 NA other upstream 2044852 31508056 ~ 31508372 (+)
G1732028 NA other downstream 1885803 35439289 ~ 35484354 (+)
G1732735 NA other downstream 2487845 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 2679636 36189389 ~ 36237829 (+)
G1733187 NA other downstream 3203503 36756989 ~ 36760221 (+)

Expression


Co-expression Network