G1730442


Basic Information

Item Value
gene id G1730442
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 34013527 ~ 34018689 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1981976
AATCTTCACTCGGTGACCGTTCCTACGATCTAGGTAAATAAATCGTGCACGAGGGATCCCCTAAACTTGGGATCTCAGGGAGAACCACACTTCGGGAAACGTAGCAGATGGACCAACCTTTGATCTAAGAGGAagcgagccgagtggataccacatctcgaactgagttttttttaaagaaaaaggtGAGCGAACCACACACAGATTTGAAGTCGAGTTTTTTTTATTATGCCTGTTACGTATACTCTGAGCGTGAATTCCTTTGTAAGGAAGGCACCTTGGCGGCGTAAGCAGGGCCGAGTCAGAGGAGAGTAATCTGGGGGTTTTATGGACTCAAAAGATACTCTGCGCTGTCCGGTTGCCAGTGACCAAGAGCCTGTGTgagtcggaccgttctgtgtgagcggggcaggtttactctgtgtgagttggaccgttctgtgtgagcggggtagggttactctgtgtgagtcggaccgttctgtgtgagcggggtagggtttACTCTGTGTGGGCAAACCTTTTGATGTTCTGTGTGGACGTCAGAAAAGTTCTATGTGAAAAatctgaccaatcctgtgtggATGATCCTGAAAGTGTGTGAGTAACTAAGATTTCTTAAAttttatatggattctgtgaattATTTGAAATTATGATAAATGGTATGTGTGTATAAAGTAATGCTGAAAATGattagatacaatttaaaccacccattcgtagacgtacgtaggttttgagttgatatcttaaatggataatttgataaagatCAAGTTTTTAAGCACTATTAAAGTAATCTACAAAATCTGGGAAATTGAGCTCTAGAAACTGATTTAGAGTGTGTCCACTTTTGATTATCTTACCCTAACGATGTAACTATAAAACGCATATTGGATTATCTCCGTCTGGGTGAAACATTTGAAATCAAACTGCCCTTAAGGTCTGAACATGTTATATTTtttcttcccagtatgagagaAATTGCGGGATTTATTGAATAAACTGTTTTCCATAAAGTTAAATAGAATTCGAGGGATGCTCGATGTAATTTATAATGTTGTACAAAGCCTAAGGTTTTCCATCAAGCTAATTATCATTGCGTGATTAAAGTGATGtagtaaagtaattgaaatacgttGCATAAGTAAACATAATCTACTTTTACTGTTTCCTAGTCATTAGTGtcgatttttttatttgattgctAATATATTCATTTGGAATTTGAGAATCATAGCTGGAGCAATGTTTGTACTATTAAAATTGGGCTATTATACTTCTGGGAATTACCGATAGTGACGTGTTTTGATTTTACTTTtgagatggggagtataaaccaatttgaaagaatagtttcaatagaatgttttgatattctctgtgaaatatgtttagatatgtgtgttaagaataattggtaaaagtaatcatttatcatgtagttaatgaactgaactaaactgttgttctgatctgttctttcgAGGTTATCATGAAGGGTGACATCAGACGGTATCTTAATGCATGGAAGAGATCATTTGGACCGAATGGTGTGTGTacctcaaaaccccctctaactggctgaagaagagagacaaaggcatTGAAGGAGGCTTTCCAAACCACTTCTACCGAGAGAAAAGAACCAAGCCAGAAATTGGTGTACAGTCTCAGATCTAAGCTatcaactgcttttctttcatggtTCTCTCATACTGTGAGAATCCACTTGGAGTGATCATGGAGAAAGATCTGTTCTAACATTTTTCTTATGATGCTGGTATGTTGGTTgacgaatggacaagacataagtggtaaagatgagacattgaaattgggacattatcaaGGGCCGTCCACTTTGAACTGTAAAGCTATTTGAAGAAAAACGAAGATGCCAGAAGATGCCGTGCCTGAGAGGGGGGGGTTTAATCTAACTGTGCCATTAAAATTGTTTATACTTTTGTGGTATCAGATTGATTGAAGAGGTCTACACCATGTAAATtgtagtaatttagattaagaatgcattgagatactgatctgcattaaaatcatgattaaaaaagttaatagtagaattatgggataattatactgtatgtaaatctgctaatattgatgtgtgttaaattgagGTTTTTACTTTGAGTGATAAGACAAATTTGAATCACTGAGGAGTGCTAAATATTCTAAATATTGGTTTGATAAATAGTTGGGTTGTTACTTATGATTTGTAATATGAATGATTTCAATGACCTATTCTCTATTCCTGAGTATATTTCTGAGCATGAGTACTTAGAGGGATGTCTGTCCTATATGTTGTGAGGAGGCCTGTGTTTAGACACTGGTTCTCATGTAATTTAAAGAGCAGTTatatgttatgtttttatttttcctcaaatggattattctgtgttattaaaaCATGTGCAAGTTTGTCTTGTA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1981976 True 2454 lncRNA 0.37 2 34013527 34018689

Neighbor

gene id symbol gene type direction distance location
LOC110500285 fam19a5 coding upstream 144511 33709461 ~ 33869016 (+)
LOC110500284 LOC106609109 coding upstream 497539 33329927 ~ 33515988 (+)
LOC110500282 LOC106609111 coding upstream 760004 33180674 ~ 33253523 (+)
LOC110501067 LOC106609112 coding upstream 846836 33054060 ~ 33166691 (+)
LOC110500281 trmu coding upstream 960020 33050475 ~ 33053507 (+)
LOC110500288 LOC106609107 coding downstream 290410 34309099 ~ 34317797 (+)
LOC100135927 LOC106609106 coding downstream 306521 34325210 ~ 34329578 (+)
LOC110500293 LOC106609102 coding downstream 748031 34766720 ~ 34782583 (+)
LOC118942784 NA coding downstream 765724 34784413 ~ 34792564 (+)
LOC110501070 wnt7b coding downstream 899003 34917692 ~ 34931171 (+)
G1730439 NA non-coding upstream 165 34012917 ~ 34013362 (+)
G1730426 NA non-coding upstream 11172 34001880 ~ 34002355 (+)
G1730422 NA non-coding upstream 13395 33999785 ~ 34000132 (+)
G1730410 NA non-coding upstream 22853 33990348 ~ 33990674 (+)
G1730409 NA non-coding upstream 24042 33989285 ~ 33989485 (+)
G1730490 NA non-coding downstream 63485 34082174 ~ 34112788 (+)
G1730581 NA non-coding downstream 100307 34118996 ~ 34119376 (+)
G1730651 NA non-coding downstream 150605 34169294 ~ 34218724 (+)
G1730744 NA non-coding downstream 278480 34297169 ~ 34297702 (+)
G1730742 NA non-coding downstream 282979 34301668 ~ 34302513 (+)
G1729465 NA other upstream 691766 33321453 ~ 33321761 (+)
LOC110500252 LOC106609149 other upstream 1851135 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 1876831 32114413 ~ 32144886 (+)
G1727220 NA other upstream 2448933 31564135 ~ 31564594 (+)
G1732028 NA other downstream 1420600 35439289 ~ 35484354 (+)
G1732735 NA other downstream 2022642 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 2214433 36189389 ~ 36237829 (+)
G1733187 NA other downstream 2738300 36756989 ~ 36760221 (+)
zgc:109889 LOC100194703 other downstream 3229938 37248296 ~ 37314293 (+)

Expression


Co-expression Network