G1730999


Basic Information

Item Value
gene id G1730999
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 34583207 ~ 34583466 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1982564
atatttcacagagaatatcaaaacattctattgaaactattctttcaaattggtttatactccccatctcactgtcaactccatCGTAGAGCCAAGGATCAAGAAGTTAGATCTATACCTCTGGAATAGATCAAAACAAACACAActatacactcaacaatacaatacaatacactcctTCACATATCACTTAAGTTGTATAACTTCAATTCAAACACTCAAAAAACTGAATCCTCCCCCATGTTTTacacacatctctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1982564 True 260 lncRNA 0.34 1 34583207 34583466

Neighbor

gene id symbol gene type direction distance location
LOC100135927 LOC106609106 coding upstream 253629 34325210 ~ 34329578 (+)
LOC110500288 LOC106609107 coding upstream 265410 34309099 ~ 34317797 (+)
LOC110500285 fam19a5 coding upstream 714191 33709461 ~ 33869016 (+)
LOC110500284 LOC106609109 coding upstream 1067219 33329927 ~ 33515988 (+)
LOC110500282 LOC106609111 coding upstream 1329684 33180674 ~ 33253523 (+)
LOC110500293 LOC106609102 coding downstream 183254 34766720 ~ 34782583 (+)
LOC118942784 NA coding downstream 200947 34784413 ~ 34792564 (+)
LOC110501070 wnt7b coding downstream 334226 34917692 ~ 34931171 (+)
LOC110500295 LOC106609100 coding downstream 445793 35029259 ~ 35033416 (+)
LOC110500296 LOC106609097 coding downstream 487904 35071370 ~ 35267800 (+)
G1730994 NA non-coding upstream 3177 34575248 ~ 34580030 (+)
G1730956 NA non-coding upstream 24347 34505242 ~ 34558860 (+)
G1730866 NA non-coding upstream 200760 34382193 ~ 34382447 (+)
G1730861 NA non-coding upstream 203359 34379588 ~ 34379848 (+)
G1730746 NA non-coding upstream 272692 34310139 ~ 34310515 (+)
G1731003 NA non-coding downstream 5048 34588514 ~ 34588730 (+)
G1731007 NA non-coding downstream 9444 34592910 ~ 34593116 (+)
G1731010 NA non-coding downstream 16237 34599703 ~ 34599903 (+)
G1731015 NA non-coding downstream 20415 34603881 ~ 34604819 (+)
G1731016 NA non-coding downstream 23498 34606964 ~ 34608157 (+)
G1729465 NA other upstream 1261446 33321453 ~ 33321761 (+)
LOC110500252 LOC106609149 other upstream 2420815 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 2446511 32114413 ~ 32144886 (+)
G1727220 NA other upstream 3018613 31564135 ~ 31564594 (+)
G1732028 NA other downstream 855823 35439289 ~ 35484354 (+)
G1732735 NA other downstream 1457865 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 1649656 36189389 ~ 36237829 (+)
G1733187 NA other downstream 2173523 36756989 ~ 36760221 (+)
zgc:109889 LOC100194703 other downstream 2665161 37248296 ~ 37314293 (+)

Expression


Co-expression Network