G1731599


Basic Information

Item Value
gene id G1731599
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 35271057 ~ 35271595 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1983241
tgagacaaatccaaccaggaagtgggaaatctgaggtttgtagtttcttttaaagcatactgttagctagctagttaacattagctgtCTAGCTCtctagctaatgttacgtgtatCATATCGTCAATCATATTTttgaacataatccctagctgtgtattgtcactttccatgttgtctgttgtctgtagcttgtgaggtgtggaaacactttgttgcttttatgtattttgtcttgttgctttttgttctatgttgctctgtctgtatgctacgtcttgcttgtcctatgttgtcCACTACTCtgtgtgtgctcactgctcaatgtttgtctgtgttgtaattgtttttaataacctgcccagggactgaggttgaaaattagccgTATGGCTAAAACCtccacttttactgaaacgttgattaaatacaatatttatgccatttactttatgtttgtaatgttatcttttattatttcttattgtggAGAAAGAACCTGCAAGTACTCccatcctcttgctcttttgcaccccagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1983241 True 539 lncRNA 0.37 1 35271057 35271595

Neighbor

gene id symbol gene type direction distance location
LOC110500296 LOC106609097 coding upstream 3257 35071370 ~ 35267800 (+)
LOC110500295 LOC106609100 coding upstream 237641 35029259 ~ 35033416 (+)
LOC110501070 wnt7b coding upstream 339886 34917692 ~ 34931171 (+)
LOC118942784 NA coding upstream 478493 34784413 ~ 34792564 (+)
LOC110500293 LOC106609102 coding upstream 488474 34766720 ~ 34782583 (+)
sh2d1ab sh21a coding downstream 232096 35503671 ~ 35510121 (+)
LOC118942786 NA coding downstream 364992 35636587 ~ 35637138 (+)
LOC110500322 LOC106609072 coding downstream 516896 35788491 ~ 35982905 (+)
sepsecs sepsecs coding downstream 728226 35999821 ~ 36039069 (+)
lgi2a LOC106609075 coding downstream 786521 36058116 ~ 36094464 (+)
G1731605 NA non-coding upstream 282056 34988751 ~ 34989001 (+)
G1731601 NA non-coding upstream 287007 34983849 ~ 34984050 (+)
G1731545 NA non-coding upstream 304335 34966492 ~ 34966722 (+)
G1731373 NA non-coding upstream 450798 34819994 ~ 34820259 (+)
G1731353 NA non-coding upstream 471111 34799576 ~ 34799946 (+)
G1731754 NA non-coding downstream 1613 35273208 ~ 35273445 (+)
G1731755 NA non-coding downstream 2030 35273625 ~ 35273884 (+)
G1731757 NA non-coding downstream 6243 35277838 ~ 35278261 (+)
G1731748 NA non-coding downstream 17256 35288851 ~ 35289535 (+)
G1731749 NA non-coding downstream 23939 35295534 ~ 35295920 (+)
LOC110500285 fam19a5 other upstream 1402080 33709461 ~ 33869016 (+)
G1729465 NA other upstream 1949296 33321453 ~ 33321761 (+)
LOC110500252 LOC106609149 other upstream 3108665 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 3134361 32114413 ~ 32144886 (+)
G1727220 NA other upstream 3706463 31564135 ~ 31564594 (+)
G1732028 NA other downstream 167694 35439289 ~ 35484354 (+)
G1732735 NA other downstream 769736 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 961527 36189389 ~ 36237829 (+)
G1733187 NA other downstream 1485394 36756989 ~ 36760221 (+)
zgc:109889 LOC100194703 other downstream 1977032 37248296 ~ 37314293 (+)

Expression


Co-expression Network