G1731980


Basic Information

Item Value
gene id G1731980
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 35307582 ~ 35308505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1983671
gcattaccacgtgtttttcaaacttccacaaacaacgttcgttttgaccactttcggaacgtttttgaggaaaaaagtccgacaagctaaaatctttccctgcttctctgctcttcagagactaagtcggatttcaaatcggtgcaaccaatctgtaactatagccgttttcgtaacccatcgcctctctttcaagtgtctgtaaatcatgtcagcagcaaggcaatttattactttccaaaacaactgtcgttttgaccactaaacaaacagtttgacaaacatagtttggcttaaaatcttactccacttctctgcttctcaaaggcggaaacgctttttaaattgggtctaccgttctcgtgggagagcgatttaattaacccctcacctgctcttcactaacagctctctgtgtcaatactgatattccaaaacgataccgttggctaggatactcgcagacgctgcagggccaaaatcatgaggagacactcctcctacaccattaagctagaaatgccgttccaatatcaacaattccgcaactgtcgcgatcgagttgtttgcatagaatttttgatatctgttatacttgttccgttattcactttcttgtcctctttttgtcctccatccgctttcattggatttctcaagatactaaagtgccccattgtgacatcatcacttccaactgacattctctgtaagtgaaatcaagctacctttgacacaaatcagctaataactccactttgcaaccacttagacaaaacatttcaagttccccagcttcgtctacttctctgctactcaaatcgggagtttggagaagaaatgatattcacatcaaaagttacagcagtttaagtaagagcaccaagatcattttctgtaacattttggcaaacagtgtccatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1983671 True 924 lncRNA 0.41 1 35307582 35308505

Neighbor

gene id symbol gene type direction distance location
LOC110500296 LOC106609097 coding upstream 39782 35071370 ~ 35267800 (+)
LOC110500295 LOC106609100 coding upstream 274166 35029259 ~ 35033416 (+)
LOC110501070 wnt7b coding upstream 376411 34917692 ~ 34931171 (+)
LOC118942784 NA coding upstream 515018 34784413 ~ 34792564 (+)
LOC110500293 LOC106609102 coding upstream 524999 34766720 ~ 34782583 (+)
sh2d1ab sh21a coding downstream 195186 35503671 ~ 35510121 (+)
LOC118942786 NA coding downstream 328082 35636587 ~ 35637138 (+)
LOC110500322 LOC106609072 coding downstream 479986 35788491 ~ 35982905 (+)
sepsecs sepsecs coding downstream 691316 35999821 ~ 36039069 (+)
lgi2a LOC106609075 coding downstream 749611 36058116 ~ 36094464 (+)
G1731975 NA non-coding upstream 5979 35301084 ~ 35301603 (+)
G1731749 NA non-coding upstream 11662 35295534 ~ 35295920 (+)
G1731748 NA non-coding upstream 18047 35288851 ~ 35289535 (+)
G1731757 NA non-coding upstream 29321 35277838 ~ 35278261 (+)
G1731755 NA non-coding upstream 33698 35273625 ~ 35273884 (+)
G1732029 NA non-coding downstream 83089 35391594 ~ 35391883 (+)
G1732030 NA non-coding downstream 85416 35393921 ~ 35394210 (+)
G1732034 NA non-coding downstream 94441 35402946 ~ 35403714 (+)
G1732038 NA non-coding downstream 116706 35425211 ~ 35425999 (+)
G1732024 NA non-coding downstream 132219 35440724 ~ 35442473 (+)
LOC110500285 fam19a5 other upstream 1438605 33709461 ~ 33869016 (+)
G1729465 NA other upstream 1985821 33321453 ~ 33321761 (+)
LOC110500252 LOC106609149 other upstream 3145190 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 other upstream 3170886 32114413 ~ 32144886 (+)
G1727220 NA other upstream 3742988 31564135 ~ 31564594 (+)
G1732028 NA other downstream 130784 35439289 ~ 35484354 (+)
G1732735 NA other downstream 732826 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 924617 36189389 ~ 36237829 (+)
G1733187 NA other downstream 1448484 36756989 ~ 36760221 (+)
zgc:109889 LOC100194703 other downstream 1940122 37248296 ~ 37314293 (+)

Expression


Co-expression Network