XLOC_003669


Basic Information

Item Value
gene id XLOC_003669
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40864955 ~ 40865542 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008675
TCAGTAATAGATGATGTATTCTGCTCTTTTGTTGTTGAAGTTACCGGAGATGGAAAGGTACCTGTTGTGTATAATGTAGTTTCCGATGTAGAAGATTTAAATGTGGTTGTAGTCCTAGGGGACTCTTCTGTTGTGAAGGGTGTAGATTCTGttattgtgggtgaactatcagGACTGGTTTTTGTCTGTTGGCGTGTGGTAAGTTCTACAGTAGCTGAAGTTTCTGTTGTAAACTCAGTCATAGATGATGTAGTCTGCTCTTCTGTTGTAGAAGTTACCGGAGATGGAGAGGTACCTGTTGTGTATAGTGTAGTTTCCATCGTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008675 True 324 lncRNA 0.40 2 40864955 40865542

Neighbor

gene id symbol gene type direction distance location
XLOC_003668 errfi1a coding upstream 17340 40812590 ~ 40847615 (+)
XLOC_003667 slc45a1 coding upstream 190885 40649412 ~ 40674070 (+)
XLOC_003666 AL954137.2 coding upstream 223168 40617896 ~ 40641787 (+)
XLOC_003664 mmel1 coding upstream 259087 40530748 ~ 40605868 (+)
XLOC_003665 AL954137.1 coding upstream 286700 40573943 ~ 40578255 (+)
XLOC_003670 CABZ01044767.1 coding downstream 23638 40889180 ~ 40889294 (+)
XLOC_003671 NA coding downstream 26139 40891681 ~ 40956123 (+)
XLOC_003672 CABZ01044764.1 coding downstream 31784 40897326 ~ 40899889 (+)
XLOC_003673 svbp coding downstream 199280 41064822 ~ 41067789 (+)
XLOC_003674 phf13 coding downstream 224032 41089574 ~ 41105632 (+)
XLOC_003369 CR854846.2 misc upstream 24741873 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 28152959 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 28170692 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 28179356 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 28184927 12679732 ~ 12680028 (+)
XLOC_003662 NA non-coding upstream 430875 40220055 ~ 40434080 (+)
XLOC_003659 NA non-coding upstream 748309 40111481 ~ 40116646 (+)
XLOC_003655 NA non-coding upstream 938083 39576541 ~ 39926872 (+)
XLOC_003654 NA non-coding upstream 1385688 39373712 ~ 39479267 (+)
XLOC_003653 NA non-coding upstream 1574321 39287369 ~ 39290634 (+)
XLOC_003676 CABZ01087025.2 non-coding downstream 326787 41192329 ~ 41201272 (+)
XLOC_003677 CABZ01087025.1 non-coding downstream 357943 41223485 ~ 41235090 (+)

Expression


Co-expression Network