Gene
RNA
| Item | Value |
|---|---|
| gene id | G1732338 |
| gene name | rpl34 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048585.1 |
| NCBI id | CM023239.2 |
| chromosome length | 64935962 |
| location | 35685557 ~ 35735970 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| rpl34 | Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in cytosol; endoplasmic reticulum; and ribosome. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL34 (ribosomal protein L34). |
| description |
|---|
| 60S ribosomal protein L34 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1984062 | False | 1818 | lncRNA | 0.42 | 5 | 35685557 | 35735257 |
| TU1984061 | False | 880 | lncRNA | 0.46 | 5 | 35718932 | 35735970 |
| TU1984063 | False | 444 | lncRNA | 0.42 | 2 | 35718932 | 35726028 |
| TU1984064 | True | 1748 | lncRNA | 0.46 | 2 | 35733241 | 35735257 |
35,650,000
35,660,000
35,670,000
35,680,000
35,690,000
35,700,000
35,710,000
35,720,000
35,730,000
35,740,000
NC_048585.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118942786 | NA | coding | upstream | 48419 | 35636587 ~ 35637138 (+) |
| sh2d1ab | sh21a | coding | upstream | 175436 | 35503671 ~ 35510121 (+) |
| LOC110500296 | LOC106609097 | coding | upstream | 417757 | 35071370 ~ 35267800 (+) |
| LOC110500295 | LOC106609100 | coding | upstream | 652141 | 35029259 ~ 35033416 (+) |
| LOC110501070 | wnt7b | coding | upstream | 754386 | 34917692 ~ 34931171 (+) |
| LOC110500322 | LOC106609072 | coding | downstream | 52521 | 35788491 ~ 35982905 (+) |
| sepsecs | sepsecs | coding | downstream | 263851 | 35999821 ~ 36039069 (+) |
| lgi2a | LOC106609075 | coding | downstream | 322146 | 36058116 ~ 36094464 (+) |
| LOC118942923 | NA | coding | downstream | 384546 | 36120516 ~ 36123923 (+) |
| LOC110500325 | ppp2r5b | coding | downstream | 453419 | 36189389 ~ 36237829 (+) |
| G1732336 | NA | non-coding | upstream | 1385 | 35683917 ~ 35684172 (+) |
| G1732334 | NA | non-coding | upstream | 2461 | 35682873 ~ 35683096 (+) |
| G1732333 | NA | non-coding | upstream | 2813 | 35682476 ~ 35682744 (+) |
| G1732324 | NA | non-coding | upstream | 9801 | 35675549 ~ 35675756 (+) |
| G1732323 | NA | non-coding | upstream | 10052 | 35675191 ~ 35675505 (+) |
| G1732467 | NA | non-coding | downstream | 130124 | 35866094 ~ 35883752 (+) |
| G1732722 | NA | non-coding | downstream | 249997 | 35985967 ~ 35986270 (+) |
| G1733069 | NA | non-coding | downstream | 798864 | 36534834 ~ 36549893 (+) |
| G1733094 | NA | non-coding | downstream | 838366 | 36574336 ~ 36576894 (+) |
| G1733056 | NA | non-coding | downstream | 853593 | 36589563 ~ 36590879 (+) |
| G1732028 | NA | other | upstream | 201203 | 35439289 ~ 35484354 (+) |
| LOC110500285 | fam19a5 | other | upstream | 1816580 | 33709461 ~ 33869016 (+) |
| G1729465 | NA | other | upstream | 2363796 | 33321453 ~ 33321761 (+) |
| LOC110500252 | LOC106609149 | other | upstream | 3523165 | 32153116 ~ 32162456 (+) |
| LOC110501063 | LOC106609150 | other | upstream | 3548861 | 32114413 ~ 32144886 (+) |
| G1732735 | NA | other | downstream | 305361 | 36041331 ~ 36042488 (+) |
| G1733187 | NA | other | downstream | 1021019 | 36756989 ~ 36760221 (+) |
| zgc:109889 | LOC100194703 | other | downstream | 1512657 | 37248296 ~ 37314293 (+) |
| G1734420 | NA | other | downstream | 1634987 | 37370957 ~ 37371667 (+) |
