G1732716 (LOC106609072)


Basic Information

Item Value
gene id G1732716
gene name LOC106609072
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 35978349 ~ 35982900 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1984466
TCCTTGTTACCTTTATTCATTGTATTAGATACTTTGTGTTTTACAGTAATTTTACATAGTGGTTTTACACATCTAGATTATATGGTTAATTGTCTGTATATATGTACACCTTAAATAAATCTTACATTAACaccaataaaataaaaacatttacagtTAAAAATGTGTATTAGTGTTTGACTCACCCTATAATCTGCAATCAATGTCAGTCTCACATGCTAAACTGGTTGTTTTTGCATTTTTTGCATTCTTGCTTGCACACAATATACCATGTAACTTTGGAAACAGTGCCTCTGCTCATAGGATATTATTTGACAGTACCTTCGACACCAGACATAAATGTCACCGAGGGAATCTGGAAAAGTGAGGCTGAATGAAAAGTACAAGTGCACTATGAAATGGCAGTTTCACTAAGGTTGGGGAAGTTTGATCTCAAGAAATCAACCCCTACCTAAGAGAAAAAGGTTAAGAACAAGTGGTTTGGTGAGGTAAGACTAATGAGAGTGTGGGTAGGAGGGATTCAATGACAGAATATGCCTGACACATTCATGTACTGTATTTTagccacacaaacacagttcTCCTTTTCTCTGGATCGTACTACAGGATAAGGCAATGGGCACTATATAGCGAAGAtttaaaaaaaggtgtgtgtggaAAACATCTGTTATCTTGTTATCTAAATGTGAATGAGGGGATGCTCACAACTTATGTCTTAGCTTTCTAActtgtgttttcatgtgtgtgcatgcgtgcaggGAAGAAGAAATGGTTCCTTGGCAGTGACAGCCCAATCTGCCCCTTGACTTTTGCACCTACACTTTAAAGACAGGTAGAGGTAAAAGGAAAAaaaatagtggtaatagtagtggtatAAATAGTAGTGGTAATAGACAAATAAATATCAGGAGGCAATGTGGTATCTAAAGCCCTAATTTTTTATACTAGCAAAACAATACACAAACGTGGTGTACACACAGGTGAAGTATCCAACCAATCAATCATGATATTACTGAATCCTTGAAGTGTTGAGGGTGACTTCATATttgattgtttaaaaaaaaatactatgaTAATATGAGAACAAGCTTACTATATCAATATTCTGAAAGATAAAAGTTTTCTTACCACTGAAACATTAAATACTATTTTTTAACACAATACAAACCTGAACCAAGGAGTTTTGTTCTAGATTGGTTCAAGTAAGGAATCTTATAAAGGCATATTTTCTATTTACATGTATTTTCTACGTATTTTGCGTTATGCATAAGGTTAACGTACAGTACATAATTCCACTTCATGTGTGCCGCCCATGGGTAACCAGCCCAAATTCCTCACATGCACTTTTCCTCATACATTCACATTATTTAGTTATTCATATTTTACAGTCAATTCTTGCtaatatacagagagagaactgaggtAATGCAGGTGTGTCTGGCCAGTTTAGATGTCTGAAAGTGAGCCACGTGGAGACATTTTGGAGGATTTCAGGAGAAATCGTTTTTAAATGTATAGGTATAGAGGTCACGATAGATGTCACGACAAGTACAGCAGTCAAATGGATGGAAATGCAATTATTAATGACACATACCAGGGTTTGGGCCGATTCTGAATTTCTGGATTTAATTAAATTACATTTCCATTTGAATTTCATAGAATTTTATTCAATTCAATTCCActtaattcaattcaaattcTTCTTCCTGTGGGGTGTGGCCAATACAATTCTGGAATTGAATTGGACTGTGTGGTCCAATGGTAATACTCGCAGAAAGCAGAAAGCACACATGTACAATCCTGACGGTCACtgatttaaccTTGCTGACTTCCCTCCTCCTTGCCTGTGTTCCCTATCTAATTCTTCAATTTCTAAATAAAGATTCAGAAGATACTTATGGATAATGGAATTCCACTCtcctttaaaacatttttttaaatcagaattgaccccaaccctgacatacagtatacagtatattgctgTTAGTTTTGTGATGTCAATGTTCCATGTACTGTAGTTTATGGGTGactgtgaaaatgactgcatgaGATTTGCTGACTATATAGATAATTATAGATTTCTATAATAAGTTTCCATTTGCTGCAAAATACTGGTAACCTCCATTCATTTGTTATTACTGTATAACTTTTTGTTAATCAAATGTCCATTTTTACATGGCAGAGTATACAGACTTCCCACATGCAGACAAAAGCACCCTTCAATTGAAAATAAATTGCACAAGGTTGATAGACATTAACCATACATATTGTTGTAGTTTTGTACATAGAAGCCAAACACTCTTGCGTCAAAGAAATATTGAAATGCTAAATATTTGAGAATTCATAATTTTTTGGGTAGTGATTATTCTGGCAGGTATAACAAGAAAATGTGTCATGCATTTTACTGCTCCTCTAAACTTCTCTAGGAGCCTGCATATTAAAGTCTTAATTTCAAGAGTGTGCTAAACATTCACTAATCTAAGTATAGCATTTTATGACTATTTCAAACATCAAGTGCCAGTTATCTTATCTACTACCGTATTTTGACTTTACATATTGGTTATGAGTGTCCTATCGGAGTctacacatgctttgtttattcAGAGTGAAGAATATTGGAAGCTAATATATATTTTGAGAGGCTGCAGATAAGGCCAATATAATCAAGTGCAGATTTTTTTAAAACTACCCTGTGGTTTTACTCTGAATTTTTACACCTGTGTGTCAGAGTTGTTAAATGTTTGAAAATGGACACAACCCCAATCTCTTGGCGTTATTCCAAATTGAGATCAGAAAAAATTATTCATACAAAAGTATCAGTTTCATTCGCTTATCTCAATTTTTAATCGTATCTGTAGTCTTTGTATATTGATGTGCAACCACATCTGTCCTTATATTCCAGCTTAAACATTGAGTCAATTATGTTATGTTTTTTCATTTATCTGCAATTGATTGAATTGGGTTTCAAGTTAAACATTTCCAGTAGAGTTTACATTTCCAATTGGTGTGTGAAGCATGGCAAGCTCTGTACAATATGAACTCTTATGTCCAATGGCGGGTGGAGAAGTGGATAAGATCATAAGTAGGCCTATCAGGACCCAGGAAGAGGCAAGATCCAACACCTAGAGTACATGTTACTGCTACAGTACAACTGGGCTACTACTATTTTAGTAATTAGAGCTATAGTGTCGATCCAAAAATAATACATGAATCTTCTGAACAGACATGTTGAGCAATGACATCCAGAAGGGGAGATGGAATATTTGAACTTTAGTCTTTTGGACAAAGCAAAAGATACATTTGCCAAAATCAGTTCCTATCTCCAGCTCTGCATTCAAAACTGCTTGGACTGCTTCGTATTTTGATGCTCTGTCACTAAGTACACAAGAGAGGAGATAATCATGGCTCCAAACCATATTTTAGTCTTGTGTGAATCCACACATTGTGTGGAGTATCAGCAACATCCCTTCATCATCATCAAACTCACTATACAACAAACACTGGAGTGACAAGTCGAGTGAAGTCATCCGGTCAGTCAGTGAAACCAGCTAAAGAGTGTCATCCAAAGTTTTATTCAAAAAGGTTTCTCACAATCTGTCCTGAAGCAGAAAGCATTATTGTTGCACCTCTGGTGTTTCATGCCAGGCTCAGCCACCACAGCTTTGTCAGAAGTCTCTTGTGTACTTCCTTCAGCCTCCTCAATCTACTGAGTATTCCACTGAGTAGTCCACTGAGTAAAACAAGTGACATGCATAAGACGGCATAGTTGCTCCTCTACCTGGCTAATACACCCCCCATCCCAAAAAACTACATCCCCGGCCATCTACAACCCCCAACCACCCGCCccaaaataataatattattttgtattgttactattattattatcattatgatgatgatgatgatgatgatgatgattattattattattaatatgatCTACTTCCGCTCAGGTCTAGCCGTCCAGTGAATCAGCCGAGCCTAATCACGCGCCCTTATTCTGAAagtatttttttgtgtatttCCTCTATCCCATCCCCATGCTTCTTGTATCCTGTAGAAGGAGTGAACATTTTGTGGCAGGAGTGGAGGGGTCTCAGATGGATATAGGGCAGGCGATGATCTTGTCTTCCAGCATAACGCTGACCACCAGGAAAACTAAGTAGAGCACGAACATGATGAAGCCCAGCAGCTTGCTCATCCGCCACTTGCAGGCAGCAATCGAGATGATGACGAAGATGAGCATGAGAAAGAGCAGCACAATGGCGCAGAACAGCCCGTTAGAGCTCACCGCCACAGGCCGCATGTTGTTGATAATGGACCATAGGAGCCATGGGAACGGCAGGCTGAAACACACAAAATAAACAGACACACGTGTTACATGGTCTTCAGCCATACTTAACGTTTATCTTTCAGCATCACATACATCTGTGTAATAAATCTAGATAATAGCTATTGTTCAGTTTAGACCTGAGAATGGACGCCTCTGGGTTGTAATGAATAAAGTCCCTTGGCAAAATGTCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1984466 True 4530 lncRNA 0.37 2 35978349 35982900

Neighbor

gene id symbol gene type direction distance location
LOC110500321 rpl34 coding downstream 242693 35718993 ~ 35735656 (-)
LOC110500319 LOC106609071 coding downstream 268460 35700548 ~ 35709889 (-)
LOC118942922 ostc coding downstream 285527 35684838 ~ 35692822 (-)
LOC118942785 NA coding downstream 377523 35598509 ~ 35600826 (-)
LOC110500318 LOC106609077 coding downstream 493487 35441230 ~ 35484862 (-)
plcb3 plcb3 coding upstream 318005 36300905 ~ 36406587 (-)
ccdc166 ccdc166 coding upstream 536789 36519689 ~ 36524024 (-)
syt4 LOC106609065 coding upstream 659884 36642784 ~ 36659746 (-)
LOC110500333 LOC106609048 coding upstream 812834 36795734 ~ 36879858 (-)
si:dkey-171c9.3 LOC106609066 coding upstream 913910 36896810 ~ 36903172 (-)
G1732696 NA non-coding downstream 31448 35946052 ~ 35946901 (-)
G1732653 NA non-coding downstream 76872 35883942 ~ 35901477 (-)
G1732373 NA non-coding downstream 232540 35745258 ~ 35745809 (-)
G1732331 NA non-coding downstream 297520 35680594 ~ 35680829 (-)
G1732288 NA non-coding downstream 350745 35627150 ~ 35627604 (-)
G1732727 NA non-coding upstream 7985 35990885 ~ 35991104 (-)
G1732729 NA non-coding upstream 9586 35992486 ~ 35992711 (-)
G1732730 NA non-coding upstream 12839 35995739 ~ 35995958 (-)
G1733286 sepsecs non-coding upstream 17779 36000679 ~ 36004681 (-)
G1733361 NA non-coding upstream 137370 36120270 ~ 36121985 (-)
G1731966 NA other downstream 682919 35292476 ~ 35295430 (-)
G1731967 NA other downstream 686595 35291233 ~ 35291754 (-)
G1731917 NA other downstream 733289 35213717 ~ 35245060 (-)
G1731328 LOC106609102 other downstream 1204471 34773466 ~ 34773878 (-)
G1734384 NA other upstream 1351631 37334531 ~ 37334874 (-)
G1735116 LOC106609058 other upstream 1783773 37766673 ~ 37772956 (-)
G1735425 NA other upstream 2213080 38195980 ~ 38196372 (-)
G1735740 NA other upstream 2543483 38526383 ~ 38526739 (-)
G1735742 NA other upstream 2544392 38527292 ~ 38527819 (-)

Expression


Co-expression Network