G1733056


Basic Information

Item Value
gene id G1733056
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 36589563 ~ 36590879 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1984831
gggggccgaataccttcgcaaggcactgtatatgtagctTTATTactttcttgtgtgtttttgttctacttgaCTTTTTTTTAATAGTACTACTAACTTGAGGAAAAAGCTGCAACATGGAAATTACTTTTAAACAACAACCACGCTGCAACAAGTTTCGGATTGAATCCGGCCTTGGTTGAGAAGACTGTCATCGGTCTATGTCTTTTACCTTTATTCAATTTAATGAGAATAATACACTTTATTTATAGAGTTAGGTCACAGATGGAAGGGATTTAGTTATCAAAATCTTTGGCTAGGTGAGTGCTTGAGAACACTACAAACATGTCAGGTTTTTTTTCTCTCGATCACTTCCTAACCATTCGTCTCCTATCTGTGTGACTACTTTTCTAGAACAGCAGCGCTTACTATTCATTGTCCTTGTATCACTGTCTCTgtcccaaatgacaacctattccatatttagtgcactatggtcaaaagtagtgtactatatagggaatagggggccattggGACGGAGCTTTTGTCTTTGCTTCAGTGAACAATGGTTGTTTTGTAATGAGGTCTGTTGTTAGATGTGTATAGCCAGTGTTAAttccatttaaaggcaatggtcCCAGAGATCACATTCACGGTAAAAGCTGCAGAGGTTGGTTCAATgagaaattacctttaaatgtcaaACGTACTACAACGCAGTTTTGGACTGAATCCCGGCCTGACTGTTCATTCAGGGTGTGTGAGGGTTAAACTATCATGTTACTGTGTAGAAAGAAGTCTGTGTTTACAAATTACTGCAGTAATAccaatgttttaaaatgtaacaTTTTATAAAAATATTTTATGTGTTGACActaattaaaatattttttcctcTCCTTGTGCCTTTTTGTCTTCCATCATGTCATGAGGTTATATCTCTAAGAAATTTATTTTTTAGTCATTTATTTTTTCCACATCTACAGTTCCTTCACAAATTCTTCATACCCCTTATTGCACATTTTCGGCAAGGACTCCCAAGTcccaagcatacccataacatgatgcagccacctccatgcttgaaaatatgaagtggtgtTCAGTGATGTGtagtgttggattttccccaaacataacgctttgtattcaggacaaaatgtgatttctttgccacatttttagcagTATTACGTAAgtgacttgttgcaaacaggatgcatgttttggaatatttttcattAAGTGCAggctttcttttcactctgtcattcaggttagtattgtggagtaactacaatattgttgatccatcctcagttttatcatatcaca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1984831 True 1317 lncRNA 0.37 1 36589563 36590879

Neighbor

gene id symbol gene type direction distance location
si:dkey-183c6.8 LOC106609082 coding upstream 1523 36523371 ~ 36588040 (+)
LOC110500329 LOC106609084 coding upstream 131766 36426140 ~ 36457797 (+)
LOC110500327 NA coding upstream 182054 36405999 ~ 36407509 (+)
LOC110500325 ppp2r5b coding upstream 351734 36189389 ~ 36237829 (+)
LOC118942923 NA coding upstream 465640 36120516 ~ 36123923 (+)
LOC110500825 LOC106609032 coding downstream 75732 36666611 ~ 36756612 (+)
htr2cl1 LOC106609050 coding downstream 625326 37216205 ~ 37242879 (+)
zgc:109889 LOC100194703 coding downstream 657417 37248296 ~ 37314293 (+)
si:dkey-172j4.3 LOC106609052 coding downstream 839917 37430796 ~ 37537824 (+)
LOC110500311 LOC106609056 coding downstream 1058623 37649502 ~ 37656769 (+)
G1733094 NA non-coding upstream 12669 36574336 ~ 36576894 (+)
G1733069 NA non-coding upstream 39670 36534834 ~ 36549893 (+)
G1732722 NA non-coding upstream 603293 35985967 ~ 35986270 (+)
G1732467 NA non-coding upstream 705811 35866094 ~ 35883752 (+)
G1732338 rpl34 non-coding upstream 853593 35685557 ~ 35735970 (+)
G1733115 NA non-coding downstream 19415 36610294 ~ 36610497 (+)
G1733116 NA non-coding downstream 19737 36610616 ~ 36610846 (+)
G1733131 NA non-coding downstream 41885 36632764 ~ 36632984 (+)
G1733135 NA non-coding downstream 48594 36639473 ~ 36639697 (+)
G1733187 NA non-coding downstream 166110 36756989 ~ 36760221 (+)
G1732735 NA other upstream 547075 36041331 ~ 36042488 (+)
G1732028 NA other upstream 1105209 35439289 ~ 35484354 (+)
LOC110500285 fam19a5 other upstream 2720586 33709461 ~ 33869016 (+)
G1729465 NA other upstream 3267802 33321453 ~ 33321761 (+)
G1734420 NA other downstream 780078 37370957 ~ 37371667 (+)
G1734479 NA other downstream 974549 37565428 ~ 37568953 (+)
cited1 LOC106609035 other downstream 1169456 37758759 ~ 37765562 (+)

Expression


Co-expression Network