G1734477


Basic Information

Item Value
gene id G1734477
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 37545149 ~ 37550449 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1986373
TGGAAAATGACTTTATTTCTTCCAAAAAAAGATAATCAAAATAAAACACAGTAAGTAAAATAAAAGCCAATGATTTTTGGATTTCTGTAACGTTCGTTTTGTATTATTTCCATGCTTAATAAAATCCTAATATTTCtgcagaaataaataaaaatgtacaaagAGGGggaagaacaagaagaagaatCAGAGACAAAGGTGTGATTCTCTGAATCCTTTGGCATCCTTGACAATCAATGACATCCATTGGCAACCTGTAGATATGCAGCCAATCCCCTTCTTCATACGTTTAATCACCCCTTGGGTAttattatatatctatatactgtataatgcaAATATCAAATAGCTCTCATGTtcagaaaaataataatacaaagacAAAAATAACATTATGGCtgatgtgtgtgtgtgtgtgtgtgtgtgtaacaTGCTTTGTGTGTGTAATTTAGTGTGCGTGCGAATCCGTCAACATTTAAGGACACACTGAGGATGAAGAAGAAACTGTTTTTACAAGAGACACAAATAGACATAAGAAGAGGTTGAGGGTTAGGCTGGTGGTAGGATGGTGGTTGTGAGGATGAGTGTAGAGGGCTATCCTTAATGTTTATACTCAGTCTGATTGCATGTGGTAAAGGCTTCTCCGTGTCTGAAACAGCTCCCTTGGGTAACATACATAAGTGCTTTTCTTCGCTACCTAACAGTCAAGGATGGCAAGCGAGCAGGGACAAACGGTACTGTGTGACTTTGGTTCCACCGGTTTGATCGATATCAGTAACGGTGAGAAAGTTGGGAGAATTAAAATAAAGATTTCTAGAAACCGCTCCAATTAGTGACCTGTCGCCTAAGAAAGGTAGAGACCAGCTCACAAAGAAATGGTTTATTAACAGCTTGCGCGCAAACACACGTGCTTCGAGATAGAGAAACTGAagtcccagtaacagggCCTAGGCTACCCATGTACACCAACGACCAGAGAACGTAACAGAAGACAAACTAACCCAACAAAGAAACTTCATAATGTATACACTGGTCCTAAGTGCAATAAACTTaggacctctaacccctgaccccatcGACTGAAAACGACCTACACATTCAAGTTTTAGGTAGTTTTAAACCCAGTAATGGGCTTTgggtgtttatttttttaatatacacTATTTATAATTTTTTTCAGGAGGGGGGCTGTTTCAGACAGAGATGTGCCTTTATTATGACATATCCCCTCCGTGCTCTAGCCTTCCACCCTCCCGGGTTGATCCTCCctttctttttcttctctcttcctctcatatTTGGTGTTGGTTGGTTTTCCTTCTGTCTGTCCTTTCGTCTGTCTGTCATTCCttcgttcattcattcattcgttCATTTAGTCTTCGGTGGTTCGCTCGGCGTGTGTTTTTGCCATCACTTTCGGCACTCTGCTCCCCCCATGAGATT
>TU1986374
TGGAAAATGACTTTATTTCTTCCAAAAAAAGATAATCAAAATAAAACACAGTAAGTAAAATAAAAGCCAATGATTTTTGGATTTCTGTAACGTTCGTTTTGTATTATTTCCATGCTTAATAAAATCCTAATATTTCtgcagaaataaataaaaatgtacaaagAGGGggaagaacaagaagaagaatCAGAGACAAAGGTGTGATTCTCTGAATCCTTTGGCATCCTTGACAATCAATGACATCCATTGGCAACCTGTAGATATGCAGCCAATCCCCTTCTTCATACGTTTAATCACCCCTTGGGTAttattatatatctatatactgtataatgcaAATATCAAATAGCTCTCATGTtcagaaaaataataatacaaagacAAAAATAACATTATGGCtgatgtgtgtgtatggatgtgtcccaaatgacaccatggctgcgtttacacaggcagccaaattcAAATCATTTCTCTTTGACCAGTCAGATCAGCTCTTTtaccaataattgggcaaaagatcagaattgagcTGCCCTTGTAAACGCAGcccatattccctgtatagtacaatACAGGGATTGtgatgtatatgtgtgtatgtgtttgcatgTTTCTATTTACATAGTTATCACCAGTTCAGCTATCAGAAGGGTAGTTTCCAAAAAAAACATGTAGGGAAAAAATGTGCACATGATCATTGAACAAACACTGACTGAAAATGAGCAAATGTATCAGTTTATAACGGATAAACTGATAAATTTTATGGAGAGATTTATCCGTTTATAACCCCAAAAAGCCATTCCTCTTTTTCCCTGTTCCTTTTTCATTTCAGGTTGATGACATCTTCAattactgtgttactacaggaactcgCCACTAGAGGGTGCTACACTTGCAGATATGATCTTTCAATAAAGGGAAAAAGTAACGTGGCATCTTTGGAAAAGTAAAAGGGTTTGGCTACACCCCCAGACCACCTCCTCCAATGCGTTGAGGACAGAGGACGCAATGAGCCAAGGAAAGACTATTGAGATTCACCCTAGAGCTATGGTTAGGGGTGTCTGTCCTTGCGGCATGTAATCAGAAATGCAACCATGACAATCCGGAACCCGGAGTTTTAACAGACAGTAAATCAGATCATGCTTTTAAGGGGAGCTGTAGAAAGAACACATCACGACCATGCACAGGGGAAGAAAAGCCTACCATAAAACAGACCAACAGCGTGATTTGACATTGTTGGCATTCGCTCTGGGAGCTAACGCTCTTCAGGTCTTAGAAGACGAGAGAAAAAGACAAGATTGAGACGCACCCCCTAAGATTATAACAGGACAATCAACATTGTAGTctccacactgtctctctccccctctgctatTCTTCCACTATTTTGAAACCAGTTCAAAGACACAAAACACAGGCAGGCCGGGTACCATGCAGAACAACAATCTAGTTTAAAAATGACTCAAAAAGAGAGAAATGAAACTACTGAAGAACCAGAGAACATAAGACATGATAAATTCCAGAGAAAAAGCTGTGCTCATCAACTTCAGTGCCAAACAAGGATTGTGTGCCAAATGGCATTATTCcccatatagtacactacttttgaccagaggcctacatagggaatagggtgccattgggataCAAATACAGTtgtccctagacactgatctaaggtcagttttgcatttctccCCCAAGGGTTTGCAGATCCTAGATCGGTCTCAGAGCAACTTCTACCCAGAGCTTCCTACCCTCCTGAGTAAGGGACTATCACAGTATGAGGAGCCCAGAGAAGGGTTTCTGTGTTTAATATATATCCACATAGTAAGGTTGGAATAATAGTGTGATATTGTGAAAatgataatgccattttagtgtTAGAGATGTTTGAAAAGACAGtcaaatttcagcctgttttggtgggatggcgtTTTGGCTTGCTTGGTGAcgtcaccaggcggtaaatttaatagaccaataagagcgTTCCAAACCTACAGCTAGcattcccctccccactcagaccactccctgACAATCTTAAcacaattcttgcttgagaaactgatatctttgcttatttttgaccattttaattgaaaacaatcaaaaAGGTAGTAATTGTTACCTAGAAAGGATTTGAAATAGAGatgaaaacagctgcattggacctttaacttcCAAACGACCACCACTGGTTCTCAACCCCCGTTTACACAGGTACTACTATCGCGAGGCAATCCTTCCTACAGACAAAGACTAGTGCCACCAGAACCCTCAAATACTTAAAGACTACAGACTTAATTCCTCATTGAGAGTATACATCCCCCTTGGCCATTGTGGATAGTTTGGTTTCACCGACAAGACATAAAATGCATATGATCCAATCAGAGACAGTTTAAGTTTAAAGATGGCGTACACGCCCACTCACAGCATGATTAAGTGAAGGCCTATGACAGAGTCCAGTGAAGAAACAGGAAGTTATAAGAAAAAGGGGATTGTAATGTATCATCTACAAAAGCAGAAGCAAGAAGAATCTAGAGCTATACATACTGGACAGTGAAGACTCCAATAGGAGATTCTATCTAAATATAGTTATACTAGACAATGAAACGAGGTCAGAAGGGGAATGAATCTAAAGTGATCCTGGAGACAATTCTTTAAATATAGACCAGGGcggtcaaactcattccatggagggccgagtgtctgctggtttttgtttttttctcctttcaattaagacctagacaaccaggtgaggggagttactAATTCGTGACTTTAAAacaagtacaagggtggagcgaaTGAGTTTGACACAAACTTGACAGAAAAGAAAAACCAGGAGAAGATAAAGCTATACATGCTAGACACAGTGACAAAGAGGCTAAGAGGGGAAATTAGAGCTAGGTCTACTAGACAGTGACGATCCACCAAGATAATCTTGAAGACAATGGCAATTGGCAAGTCACCAAGAGGTGAATATAGAGCTATGCACACTAGACCAAAGAGCAGCAAAGATGCTAAGATAGTGTTCTAGAGCGCTAGGTCTACTAGAAAGTGAAAAGGATCAGTCAGACGCTCCACAGTACTCAACTCACTGGTGATGTGGACCGAGACAAGGGGAAGGGTTCGTCTTAGGGATCTGCATGTGCATTCAAAACACAAGCACTCCGCTgcacctgcaaatctgtgtacgtgagcaatacactttgatttgatccATTCATTTATCACCAACTCTCCTTTCTTTCAGGTTCTGAATGTGGTCATACCAGTGAAACATTTCAGCTTGTTCATCAAaatataatgatatatatatatatatataacataacTAGGGGGCATAACTCACTATTGGCTTCAGCGTCAAGATATAGGAAGTAAACAGAAAACAGTCCTCAATGAGAAACGCATGGCATATATTACAAACCAATGTGTGTTATTACAGGGGAATTAGACAGCAAAAAGTATGGCAACTGTGACCCTATACCTGTTTTGACCTTTGGCACCAACAGTTCAGTTACATTGACATCTTTTATAAAGCCTATGGGACCAAGAGTATGCTAAAACCAGTATTGTCCATTTCAACTCCATGTCCCCCAAATATTTAACAATAAAGTAACCCTTGGCAATTAAGTTTCATTCAGCGCTAACCAGTACCAAACTTATTGGCACATATATTTGttcaaaataaaaacatgaaaCAGTTCTGTTGAGTCATCAACAGTTTGACAATATCCTTCCTTTGACACAAAAAGTTACTTTGACATCCTTTCATTTGACCCATCTTGACAGTTGGGAAGAAAATGACTGCATATGGCTTTAGCAACAATAGGACACCATcgagagcaatggacattatgaGAGAGGAAACACAAATTGTGACATCAACTGTCAGAATGATCCAATTCTGAAATCAAACATTGTTTCCGCaggatggaggtgtgtgtgtgtgtgtgtgagtaacaTGCTTTGTGTGTGTAATTTAGTGTGCGTGCGAATCCGTCAACATTTAAGGACACACTGAGGATGAAGAAGAAACTGTTTTTACAAGAGACACAAATAGACATAAGAAGAGGTTGAGGGTTAGGCTGGTGGTAGGATGGTGGTTGTGAGGATGAGTGTAGAGGGCTATCCTTAATGTTTATACTCAGTCTGATTGCATGTGGTAAAGGCTTCTCCGTGTCTGAAACAGCTCCCTTGGGTAACATACATAAGTGCTTTTCTTCGCTACCTAACAGTCAAGGATGGCAAGCGAGCAGGGACAAACGGTACTGTGTGACTTTGGTTCCACCGGTTTGATCGATATCAGTAACGGTGAGAAAGTTGGGAGAATTAAAATAAAGATTTCTAGAAACCGCTCCAATTAGTGACCTGTCGCCTAAGAAAGGTAGAGACCAGCTCACAAAGAAATGGTTTATTAACAGCTTGCGCGCAAACACACGTGCTTCGAGATAGAGAAACTGAagtcccagtaacagggCCTAGGCTACCCATGTACACCAACGACCAGAGAACGTAACAGAAGACAAACTAACCCAACAAAGAAACTTCATAATGTATACACTGGTCCTAAGTGCAATAAACTTaggacctctaacccctgaccccatcGACTGAAAACGACCTACACATTCAAGTTTTAGGTAGTTTTAAACCCAGTAATGGGCTTTgggtgtttatttttttaatatacacTATTTATAATTTTTTTCAGGAGGGGGGCTGTTTCAGACAGAGATGTGCCTTTATTATGACATATCCCCTCCGTGCTCTAGCCTTCCACCCTCCCGGGTTGATCCTCCctttctttttcttctctcttcctctcatatTTGGTGTTGGTTGGTTTTCCTTCTGTCTGTCCTTTCGTCTGTCTGTCATTCCttcgttcattcattcattcgttCATTTAGTCTTCGGTGGTTCGCTCGGCGTGTGTTTTTGCCATCACTTTCGGCACTCTGCTCCCCCCATGAGATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1986373 False 1446 lncRNA 0.40 5 37545149 37550449
TU1986374 True 4998 lncRNA 0.40 4 37545149 37550449

Neighbor

gene id symbol gene type direction distance location
si:dkey-172j4.3 LOC106609052 coding upstream 7325 37430796 ~ 37537824 (+)
zgc:109889 LOC100194703 coding upstream 233909 37248296 ~ 37314293 (+)
htr2cl1 LOC106609050 coding upstream 302276 37216205 ~ 37242879 (+)
LOC110500825 LOC106609032 coding upstream 788537 36666611 ~ 36756612 (+)
si:dkey-183c6.8 LOC106609082 coding upstream 957109 36523371 ~ 36588040 (+)
LOC110500311 LOC106609056 coding downstream 99053 37649502 ~ 37656769 (+)
LOC110500309 LOC106604291 coding downstream 150992 37701441 ~ 37703347 (+)
hdac8 hdac8 coding downstream 170669 37721118 ~ 37757590 (+)
cited1 LOC106609035 coding downstream 208310 37758759 ~ 37765562 (+)
rs4x rs4x coding downstream 216205 37766654 ~ 37772954 (+)
G1734461 NA non-coding upstream 83973 37460555 ~ 37461176 (+)
G1734435 NA non-coding upstream 138327 37406569 ~ 37406822 (+)
G1734427 NA non-coding upstream 152429 37392505 ~ 37392720 (+)
G1734425 NA non-coding upstream 167868 37376957 ~ 37377281 (+)
G1734424 NA non-coding upstream 168290 37376629 ~ 37376859 (+)
G1734478 NA non-coding downstream 1668 37552117 ~ 37553314 (+)
G1734548 NA non-coding downstream 64129 37614578 ~ 37614813 (+)
G1734550 NA non-coding downstream 69498 37619947 ~ 37620381 (+)
G1734553 NA non-coding downstream 106496 37656945 ~ 37657310 (+)
G1734420 NA other upstream 173482 37370957 ~ 37371667 (+)
G1733187 NA other upstream 786266 36756989 ~ 36760221 (+)
LOC110500325 ppp2r5b other upstream 1308884 36189389 ~ 36237829 (+)
G1732735 NA other upstream 1502661 36041331 ~ 36042488 (+)
G1734479 NA other downstream 14979 37565428 ~ 37568953 (+)
G1734960 NA other downstream 492642 38043091 ~ 38045066 (+)
G1734961 NA other downstream 494659 38045108 ~ 38046506 (+)
LOC110500301 LOC106609063 other downstream 527102 38076983 ~ 38083972 (+)

Expression


Co-expression Network