G1734960


Basic Information

Item Value
gene id G1734960
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 38043091 ~ 38045066 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1986951
gccggggtgtggacatgaagctaggcttagtgttagggttgagccgtgttgtggacatgaagctaggcttagtgttagggttgagccgtggtgtggacatgaagctaggcttagtgttagggttgagccgtggtgtggacatgaagctaggcttagtgttagggttgagccggggtgtggacatgaagctaggcttagtgttagggttgagccggggtgtggacatgaagctaggcttagtgttagggttgagccggggtgtggacatgaagctaggcttagtgttagggttgagccgtggtgtggacatgaagctaggcttagtgttagggttgagccgtggtgtggacatgaagctaggcttagtgttagggttgagccgtggtgtggacatgaagctagggtgagggttaggattagggttgagccggggtgtagacatgaagctaggcttaATGTTAGGGTTGAGCCGTGGTGTGGACATGAAGtgagggttaggattaaggttgagccggggtgtggacatgaagctaggcttagtgttagggttgagccgtggtgtggacatgaagtgagggttaggattaaggttgagccggggtgtagacatgaagctaggcttagtgttagggttgagccggggtgtagacatgaagctagggttaggattaaggttgagccggggtgtagacatgaagctagggttaggattaaggttgagccggggtgtagacatgaagctagggttaggattaaggttgagccggggtgtagacatgaagctagggttagagagATAAGGCCAGGCACCATAGGCTGAAATGAAATGTTTGCATCTACCTATCAATTTTGAGATTTGTTGGTATTTTGGTACATTGGTATTTTCCAAAAAATGATAAACAATATAATGGATGCAAATGTGTATTTTTGTTAGTTTATCATCATACCACTGTCATAAACATTTTTATGAATTTTAACCACTTTAAAATGGACGCATCAATAATTTCAAAGCTCACTATATTGAATTACACAATGTAAAAGCCCATTTCATAGAGAATGTTTCAAACCGGACTATATTTAGTAACTTACTTCAAAGAGATAGTGGATGGGTCTAAATTGGGGTTTGTCATTTGGGAGTCTAATTTCAGCGTACTTGTCTTTAACTGCCATTTCCTGAAAGTCAGACTCTTCCCGCATTTTTTCGTCTTCAGAAGCATCTGCAATCACCATTTGTTGTATGGTTATGCTTAGATATATTCTCCAGACTGGCTCGGAGGGCCATTGTAATGTTTTATTCTAGATAACATTTTCTTTGGTGAAAAATGtgccaaaaaaatgcattttatgTACGTTTTTGTATTTTACAGCAAGATGAAAAAAGTACTCATCCCCAAGTCCTGTCCTGGAATGTCTTAAcaaaatgaaaccaaaatatgtCAAATGACTTCATCCAGTGGCCAGAAAAACAGAGTTGTGTGATATGCAAATATGGGCATATTTACTGAACATTGCCTAATTTGCATATTCTactaaaatatatatgttttaagtATTATTATTTGTAAAAATAATTATGTACACTCAACTGTTAAAAGTTGCTTGTCATATGATTAggattaaaacatttttatttttgtgtg
>TU1986952
gccggggtgtggacatgaagctaggcttagtgttagggttgagccgtgttgtggacatgaagctaggcttagtgttagggttgagccgtggtgtggacatgaagctaggcttagtgttagggttgagccgtggtgtggacatgaagctaggcttagtgttagggttgagccggggtgtggacatgaagctaggcttagtgttagggttgagccgtggtgtggacatgaagtgagggttaggattaaggttgagccggggtgtagacatgaagctaggcttagtgttagggttgagccggggtgtagacatgaagctagggttaggattaaggttgagccggggtgtagacatgaagctagggttaggattaaggttgagccggggtgtagacatgaagctagggttaggattaaggttgagccggggtgtagacatgaagctagggttagagagATAAGGCCAGGCACCATAGGCTGAAATGAAATGTTTGCATCTACCTATCAATTTTGAGATTTGTTGGTATTTTGGTACATTGGTATTTTCCAAAAAATGATAAACAATATAATGGATGCAAATGTGTATTTTTGTTAGTTTATCATCATACCACTGTCATAAACATTTTTATGAATTTTAACCACTTTAAAATGGACGCATCAATAATTTCAAAGCTCACTATATTGAATTACACAATGTAAAAGCCCATTTCATAGAGAATGTTTCAAACCGGACTATATTTAGTAACTTACTTCAAAGAGATAGTGGATGGGTCTAAATTGGGGTTTGTCATTTGGGAGTCTAATTTCAGCGTACTTGTCTTTAACTGCCATTTCCTGAAAGTCAGACTCTTCCCGCATTTTTTCGTCTTCAGAAGCATCTGCAATCACCATTTGTTGTATGGTTATGCTTAGATATATTCTCCAGACTGGCTCGGAGGGCCATTGTAATGTTTTATTCTAGATAACATTTTCTTTGGTGAAAAATGtgccaaaaaaatgcattttatgTACGTTTTTGTATTTTACAGCAAGATGAAAAAAGTACTCATCCCCAAGTCCTGTCCTGGAATGTCTTAAcaaaatgaaaccaaaatatgtCAAATGACTTCATCCAGTGGCCAGAAAAACAGAGTTGTGTGATATGCAAATATGGGCATATTTACTGAACATTGCCTAATTTGCATATTCTactaaaatatatatgttttaagtATTATTATTTGTAAAAATAATTATGTACACTCAACTGTTAAAAGTTGCTTGTCATATGATTAggattaaaacatttttatttttgtgtg

Function

NR:

description
PREDICTED: probable ATP-dependent RNA helicase ddx42

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1986951 False 1640 TUCP 0.42 2 38043091 38045066
TU1986952 True 1298 lncRNA 0.39 3 38043091 38045066

Neighbor

gene id symbol gene type direction distance location
nhsl2 nhsl2 coding upstream 89871 37801058 ~ 37953220 (+)
rs4x rs4x coding upstream 270137 37766654 ~ 37772954 (+)
LOC110500301 LOC106609063 coding downstream 31917 38076983 ~ 38083972 (+)
LOC110500338 LOC106609064 coding downstream 87993 38133059 ~ 38166964 (+)
col4a6 LOC106608923 coding downstream 250364 38295430 ~ 38482345 (+)
ankrd46b ankrd46 coding downstream 438337 38483403 ~ 38496665 (+)
LOC118942926 NA coding downstream 461038 38506104 ~ 38514584 (+)
G1734921 NA non-coding upstream 65133 37977100 ~ 37977958 (+)
G1734878 NA non-coding upstream 136311 37906577 ~ 37906780 (+)
G1734877 NA non-coding upstream 138067 37904622 ~ 37905024 (+)
G1734864 NA non-coding upstream 154366 37888524 ~ 37888725 (+)
G1734802 NA non-coding upstream 253310 37789405 ~ 37789781 (+)
G1734963 NA non-coding downstream 2385 38047451 ~ 38047988 (+)
G1734853 NA non-coding downstream 6017 38051083 ~ 38056244 (+)
G1734980 NA non-coding downstream 30688 38075754 ~ 38076214 (+)
G1734981 NA non-coding downstream 31397 38076463 ~ 38076967 (+)
G1734959 NA non-coding downstream 42365 38087431 ~ 38088046 (+)
cited1 LOC106609035 other upstream 279833 37758759 ~ 37765562 (+)
G1734479 NA other upstream 474138 37565428 ~ 37568953 (+)
G1734420 NA other upstream 671424 37370957 ~ 37371667 (+)
zgc:109889 LOC100194703 other upstream 790916 37248296 ~ 37314293 (+)
G1733187 NA other upstream 1284208 36756989 ~ 36760221 (+)
G1734961 NA other downstream 42 38045108 ~ 38046506 (+)
arrb2b LOC106608931 other downstream 822901 38867935 ~ 38939119 (+)
nat16 LOC106608942 other downstream 1134221 39179147 ~ 39211035 (+)
G1736098 NA other downstream 1188598 39233664 ~ 39289670 (+)
LOC118943010 NA coding upstream 271644 37771313 ~ 37771447 (+)
LOC118943014 NA coding upstream 273168 37769848 ~ 37769923 (+)
LOC118943013 NA coding upstream 274874 37768142 ~ 37768217 (+)

Expression


Co-expression Network