G1734853


Basic Information

Item Value
gene id G1734853
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 38051083 ~ 38056244 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1986817
ACCAGTTATTTATTGGAGAAAGTTGAGACCAAAAcctttttcccccaaacataCACATTTTCACTGCATCTCATTTTCACTACATCTCACTTTGCACCCCAATAAACACTCCTCCCCTTCTCAAAGTGCACTTCAACTTAAATCACTTTACACAGAGCAGTGCCGGGTTCAATTCCTATTACATTCTTGGCGAGTTAAAGTAGTGAAATGGACATCTGTGGACAAATCCCCCATGGCAAATTCAGTTGACTGGGATTGAAATGAAATTACCACCCCAGGAAATGTTTCTAGGACAAGGGATTTTTCCTGATCAGGAAAAACATCCTGGTCGTAATTGAATATGATCAATCGTATAGACCTCTTATTTCAAGCAAGCAATTAATTATACTCCAATAACATCTTTATATTTACACATTTTCAAtgtctccatcccaaatggcaccctattccctatgtagtgcactacttttgaacagcaccctattccctatatagtgcactacttttgacagccctatgggcactggtcaaaagtagtgcactacatagggaatagggtgacatttgggacaaacATTCTCTCAAATATAACCCCAAATAAATCACAACCCCATTCATCTCAGCTGCCTACACAAGAATGGTAGGTCTAAATTagcaaaatatatagaaaaagtTAATAATAATACTTAAAATAAACTAACTTCAGACCCTAGTTTTAATTTGTTGTTCCCACCCGTGTCTTCTAAACCATCACTACCCCTCATCAAGTTTATGGAAGTATGGTGgtgtatgcgtcccaaatggtgcccttttccctatgtagtacaacacatagggaatggggtgccatttgggacacacctgGTATGTGTGTCAGTACGTACACAGAATTTCTTTAGAAGAAAAAGAACAGCCAACTCTCCTCGTGTCCTTCCCTTCGCCTAAACCGGGCACAGTCATTGGTTACGTGAGAAACCTTATCAGCGGCTGGGACATACAGAGGAGCAAAAATAGTTTCCAGCGCATCTTGAAATCGTTGTTCCTACAAATTTTGCTGTAGATTTTGAACGGTTGGAGTGATTACCACCTATAAAAGCTGTGCAGGGCTCGTTAGAAGGGAGAGTGATGAGTCTGCACAGAATAACTGAGGGAAATTAATCGATTCTCCACAAATGATCTTATATCATTGCTTGATGATCATCCCTGATGTTTTCTGGAACTTTACAATACCTTCCTGATGCATTTGTTTCGGATACCTCCAAGTGTCCAAAAATAGAGAATCAGATCATCAAATAGATTGACGGTCTGTTAATAGTATCTTAAATATCATGTATAGATCAATTTATTATAGCGTACTATTTTGGTGACCACCCCCTACCCCCATTCTCTGACGGGTGTGCGGCTCGCCCAGCGATTTTGTTTTACTAAAGTGTCTCCCTCTGAAATATTAGTAACTACCAATGATCTACAACGAGGTGAAAAGAACTGGACTGGTTAAACCAAATACCTAGAAATGGATAGAAAATGTTGCTGTCCCCTACCCAGGTTTTACACATCACTGCAGCtgaaggaaaggagacgaggTGAGGAAGCCACGTTAAGACTATTGATACGCACCCAGGAAGCAAAACGGGACACATTGCAGACCAGTGTAGTTTGTTAGTTACAGACGAAGCTGCTATATCTAAACACCATTTCATGCAGCTAAAAAGGGAGACTCGGGGATATGACGTAGGTgcacaaagtaaacagcatagtgggtcgaTTTCCGCAACTAAGAGCGCTGAGGCGCGAGGCTAAACATCTCGGCGTGAAGCAAACCCGTGCACAGTCGCAAATACTGCGTCTGACTCTGTGGGAGCGATGTCTTGCTCATCGCAAAATGTCAGCAGTGCTGTTCGTGGCAACATCATTTCACGGAGTCTACCTTTAACATTAGGCTGCATTACATGTCCCTCTGTCAGTTAGGCTGGAATACACACTATGGAAAGCTGTGTGACACCTGTTTCTCTGCACTGTGTCCAGCCATGCGTGTCCTGCGGCGTGTGCTCGCGATCACTCACTTCAAACACAAATCAACCCAAACGTGATAattggctctgtgtgtgtgtgtgtgtgtgcgtgcgtcagtTGCACTGTCAGCAGCAAGAAAAGGGGTCAAACCActgttatacacacacacctctggtaTGCCACACCTCACTTCACTCACCTACGACACACACCAAAGGTTAGGGAGTACAGAgacgcagacagacagggtagacggagtgtgcgtcccaaatggcaccctattccttacgtgccccggtgaaaagtagtgcactacaaaagatacagagttccatttgggactcaccCAGTGAGAGTTTAACCCTATAGGCTAGAAGAGTGTACTAGGTAAATACTCTAGATCGTAATAGCCTAAGTTCAATCATTAATGAGTTTAGCTCCCTCACCATCCAAACACGTTCTAAGTAGAGTAGCAAGTCACACAATCTAGCATTTAAAAAGGGCAATTCctccacttttcaacctcatatctCCAACATCATACCAGTGTGAACATATGCGAAAAGAGCAAATTTCCATGATCTCTGGTTAAAAAGACAAGGGGGGAAAAAAcgcttctctgtgacatcacagggtaggattaaaGTACTGCAAAAACACTTTTTAGCCTCGGTACTGGTACCAAGTTATTGTGTGtttattcctcgtgttattatttttctaaatCAGGTtctcctttttctcctctctgCATTGTCAGAAAACAAACACATGTTACAGATATTTTGATCTAGCCAGAGGGAGGGCATTTTCTTGCTCCGCACTTCACTGCAAATCTCAAGAGTTAGGAAATGTATtttaccgttatttaactaggcaagtcatttaagaacaaattcttattttcaatgacggcctaggaacagtgggttaactgccttcttcaGGTTGCGGAACGACAGatctgtaccttgtcagctcggtttCTGCGTATCTTCCAGAcagaattttgggaaagttaccagaGTTCTGCAACTCTATACACAACGTAAAATGTTTTGTTTAAGTCCTTCACCAATGTCAACCTCATATTAGTAATTAGTTAACCCTGAAAACAAGCAGCACGTCTAAGACAGTTAGATTTGAGCTCGCAAAGGAATGGTTTATGCGTTAAAATATGAATTAATATATGGTTGCAGAGTATAGCCTAAAAacacaaaatggcaccctatacccacTAGGGCTCTggacaaaggtagtgcactatgtagtgaataagGTGCCTAGGTCTCCAACTGGTGGGGTGTGTTTGAGATTTAAGAAAACTCTGGGCCTTAGTCAGACCACAGCTGAGTCCCTAGGAGACCTGGTCAAAAATAGCACAATATATGTTAGAGAATCAGGTGCCATTAAGACACAACCTATATATCTAGTACTGGTCAGGATTGGTGAAAACTCCAGGCCCTAAGTATGGGCCAACCAATAAGCAGCCAGTTTCgtactgtatatttaaaaacGGCAGACTGTCTTACATTCAACTTTAATACAGATCTCACTCTGGGCCTAGCTAACATAAACACCTCCCATGTCAGAGTGATggatcagggcctgtattcataaagcttctcagagtaagagtgttgatctaggatcagatttaaAAAGTCAAAACTGATCCTAGGTCAGCACTCCTGCTCTGGAGACATTTTATGAATAGTGGTCCTTAATCAATGTATCTTTCTGTTGAGAGTACAGGCTCTGTTCCAATACCTACACCAGCGTATTACTTAGAATGTATTGGGACTGCATACTTGGTATTGTGCTAGAATAGATATTGGGACAAAGCCTTTTAAAAAGAGTGAAGTTAGGTTTATTACCCCAACTGGCAGTGTAGCACATACTTAATATTATAAACCAAACAACCGCTATGTTTGGTTTACTTCTACGgtcaaaaaaaaataaacaggaaATGTTTGTATACCTCAGGCTCTGATTGGAAGTTTCATATCAGGTGACAGGAAGAGGAGCTAAATGTTGCAGCAGCCAATCAGGTTTATACTGCATTAAAGACGACACAAAAGAGGATGGCTGGGATATGTCCCAAATGACAGCCTACTCCATATATAGTGCTGTACTTATAGAGTGCAGTACATAGGGAATATGCTGCCATTTGAAGCACAGCCATTGACACCAGTGAGATACTTGCTTGCTTAGGAGACAGATATAAGATAAACATCTGGTTGGCAGGTTATTTGTAGTTGGTGGTGTAGTTTGCTGTTGTGGCCAGAGGGGGAAGTTAGAGAGCTTATATGCGTGTGTCCCTTTAAACAGATGGTAATATAGATGTGTAGCTTTCAGGATCTGAACCATGATATAATAAAACACTGCCAGATCTGGCCCGGTGAGCTGCAAAGGGACCAAACTCAACTCTCCACCCCACTCTCCAAACTAACAACAACTggcaacaaagtattgagaacaTTCAAGAAATGGCAGATCCACTTTTCATCAATCCCAAATCCTGTTTAGCCCCTCTGAGTGGCACTAAATATGACAAGGACACCAATAATTGATGAAACACCAGTAAATGGCGCCACATCAGTAACGGCACACCATGTAAGCAGAGAGCTCGCCAAACTAACACACCATATATTTCTAATCTGCTgtcaaaccccccaaaaaagacAACCAGGACGATGATgatgaaaaggaggagaggatgacGAAACATAACAATCCCCGGTACCTGCTCTTCGTTCTACGATGTCATATCAACTGATCAGTTGCTCAGGCATCGTTGGCTCCTGTCTGCTGAAGATCCTCCTCTATGCATCCTCTCGGCGCTCCACAGCTCCCGCTGTAAAGCCTGAATATTTAAAAACAGGTGGTGGGCTAGGCGGGGCCTGTGGCTGCCCAAGCCCCTCCCCTCTATGCTGAGTCCCAATCCCAATGGCCCGTTTCAGCCTTGGGCCGCTGCCATTTGCTGGTTCAGTCCCGGGACTGGTAGAACAGGATGTAACCTGACTCAGAGTTCTTAGAAATGTCAGACGTTAGACCGTAGAACTCCTCGATCGCCT
>TU1986818
ACCAGTTATTTATTGGAGAAAGTTGAGACCAAAAcctttttcccccaaacataCACATTTTCACTGCATCTCATTTTCACTACATCTCACTTTGCACCCCAATAAACACTCCTCCCCTTCTCAAAGTGCACTTCAACTTAAATCACTTTACACAGAGCAGTGCCGGGTTCAATTCCTATTACATTCTTGGCGAGTTAAAGTAGTGAAATGGACATCTGTGGACAAATCCCCCATGGCAAATTCAGTTGACTGGGATTGAAATGAAATTACCACCCCAGGAAATGTTTCTAGGACAAGGGATTTTTCCTGATCAGGAAAAACATCCTGGTCGTAATTGAATATGATCAATCGTATAGACCTCTTATTTCAAGCAAGCAATTAATTATACTCCAATAACATCTTTATATTTACACATTTTCAAtgtctccatcccaaatggcaccctattccctatgtagtgcactacttttgaacagcaccctattccctatatagtgcactacttttgacagccctatgggcactggtcaaaagtagtgcactacatagggaatagggtgacatttgggacaaacATTCTCTCAAATATAACCCCAAATAAATCACAACCCCATTCATCTCAGCTGCCTACACAAGAATGGTAGGTCTAAATTagcaaaatatatagaaaaagtTAATAATAATACTTAAAATAAACTAACTTCAGACCCTAGTTTTAATTTGTTGTTCCCACCCGTGTCTTCTAAACCATCACTACCCCTCATCAAGTTTATGGAAGTATGGTGgtgtatgcgtcccaaatggtgcccttttccctatgtagtacaacacatagggaatggggtgccatttgggacacacctgGTATGTGTGTCAGTACGTACACAGAATTTCTTTAGAAGAAAAAGAACAGCCAACTCTCCTCGTGTCCTTCCCTTCGCCTAAACCGGGCACAGTCATTGGTTACGTGAGAAACCTTATCAGCGGCTGGGACATACAGAGGAGCAAAAATAGTTTCCAGCGCATCTTGAAATCGTTGTTCCTACAAATTTTGCTGTAGATTTTGAACGGTTGGAGTGATTACCACCTATAAAAGCTGTGCAGGGCTCGTTAGAAGGGAGAGTGATGAGTCTGCACAGAATAACTGAGGGAAATTAATCGATTCTCCACAAATGATCTTATATCATTGCTTGATGATCATCCCTGATGTTTTCTGGAACTTTACAATACCTTCCTGATGCATTTGTTTCGGATACCTCCAAGTGTCCAAAAATAGAGAATCAGATCATCAAATAGATTGACGGTCTGTTAATAGTATCTTAAATATCATGTATAGATCAATTTATTATAGCGTACTATTTTGGTGACCACCCCCTACCCCCATTCTCTGACGGGTGTGCGGCTCGCCCAGCGATTTTGTTTTACTAAAGTGTCTCCCTCTGAAATATTAGTAACTACCAATGATCTACAACGAGGTGAAAAGAACTGGACTGGTTAAACCAAATACCTAGAAATGGATAGAAAATGTTGCTGTCCCCTACCCAGGTTTTACACATCACTGCAGCtgaaggaaaggagacgaggTGAGGAAGCCACGTTAAGACTATTGATACGCACCCAGGAAGCAAAACGGGACACATTGCAGACCAGTGTAGTTTGTTAGTTACAGACGAAGCTGCTATATCTAAACACCATTTCATGCAGCTAAAAAGGGAGACTCGGGGATATGACGTAGGTgcacaaagtaaacagcatagtgggtcgaTTTCCGCAACTAAGAGCGCTGAGGCGCGAGGCTAAACATCTCGGCGTGAAGCAAACCCGTGCACAGTCGCAAATACTGCGTCTGACTCTGTGGGAGCGATGTCTTGCTCATCGCAAAATGTCAGCAGTGCTGTTCGTGGCAACATCATTTCACGGAGTCTACCTTTAACATTAGGCTGCATTACATGTCCCTCTGTCAGTTAGGCTGGAATACACACTATGGAAAGCTGTGTGACACCTGTTTCTCTGCACTGTGTCCAGCCATGCGTGTCCTGCGGCGTGTGCTCGCGATCACTCACTTCAAACACAAATCAACCCAAACGTGATAattggctctgtgtgtgtgtgtgtgtgtgtgcgtgcgtcagtTGCACTGTCAGCAGCAAGAAAAGGGGTCAAACCActgttatacacacacacctctggtaTGCCACACCTCACTTCACTCACCTACGACACACACCAAAGGTTAGGGAGTACAGAgacgcagacagacagggtagacggagtgtgcgtcccaaatggcaccctattccttacgtgccccggtgaaaagtagtgcactacaaaagatacagagttccatttgggactcaccCAGTGAGAGTTTAACCCTATAGGCTAGAAGAGTGTACTAGGTAAATACTCTAGATCGTAATAGCCTAAGTTCAATCATTAATGAGTTTAGCTCCCTCACCATCCAAACACGTTCTAAGTAGAGTAGCAAGTCACACAATCTAGCATTTAAAAAGGGCAATTCctccacttttcaacctcatatctCCAACATCATACCAGTGTGAACATATGCGAAAAGAGCAAATTTCCATGATCTCTGGTTAAAAAGACAAGGGGGGAAAAAAcgcttctctgtgacatcacagggtaggattaaaGTACTGCAAAAACACTTTTTAGCCTCGGTACTGGTACCAAGTTATTGTGTGtttattcctcgtgttattatttttctaaatCAGGTtctcctttttctcctctctgCATTGTCAGAAAACAAACACATGTTACAGATATTTTGATCTAGCCAGAGGGAGGGCATTTTCTTGCTCCGCACTTCACTGCAAATCTCAAGAGTTAGGAAATGTATtttaccgttatttaactaggcaagtcatttaagaacaaattcttattttcaatgacggcctaggaacagtgggttaactgccttcttcaGGTTGCGGAACGACAGatctgtaccttgtcagctcggtttCTGCGTATCTTCCAGAcagaattttgggaaagttaccagaGTTCTGCAACTCTATACACAACGTAAAATGTTTTGTTTAAGTCCTTCACCAATGTCAACCTCATATTAGTAATTAGTTAACCCTGAAAACAAGCAGCACGTCTAAGACAGTTAGATTTGAGCTCGCAAAGGAATGGTTTATGCGTTAAAATATGAATTAATATATGGTTGCAGAGTATAGCCTAAAAacacaaaatggcaccctatacccacTAGGGCTCTggacaaaggtagtgcactatgtagtgaataagGTGCCTAGGTCTCCAACTGGTGGGGTGTGTTTGAGATTTAAGAAAACTCTGGGCCTTAGTCAGACCACAGCTGAGTCCCTAGGAGACCTGGTCAAAAATAGCACAATATATGTTAGAGAATCAGGTGCCATTAAGACACAACCTATATATCTAGTACTGGTCAGGATTGGTGAAAACTCCAGGCCCTAAGTATGGGCCAACCAATAAGCAGCCAGTTTCgtactgtatatttaaaaacGGCAGACTGTCTTACATTCAACTTTAATACAGATCTCACTCTGGGCCTAGCTAACATAAACACCTCCCATGTCAGAGTGATggatcagggcctgtattcataaagcttctcagagtaagagtgttgatctaggatcagatttaaAAAGTCAAAACTGATCCTAGGTCAGCACTCCTGCTCTGGAGACATTTTATGAATAGTGGTCCTTAATCAATGTATCTTTCTGTTGAGAGTACAGGCTCTGTTCCAATACCTACACCAGCGTATTACTTAGAATGTATTGGGACTGCATACTTGGTATTGTGCTAGAATAGATATTGGGACAAAGCCTTTTAAAAAGAGTGAAGTTAGGTTTATTACCCCAACTGGCAGTGTAGCACATACTTAATATTATAAACCAAACAACCGCTATGTTTGGTTTACTTCTACGgtcaaaaaaaaataaacaggaaATGTTTGTATACCTCAGGCTCTGATTGGAAGTTTCATATCAGGTGACAGGAAGAGGAGCTAAATGTTGCAGCAGCCAATCAGGTTTATACTGCATTAAAGACGACACAAAAGAGGATGGCTGGGATATGTCCCAAATGACAGCCTACTCCATATATAGTGCTGTACTTATAGAGTGCAGTACATAGGGAATATGCTGCCATTTGAAGCACAGCCATTGACACCAGTGAGATACTTGCTTGCTTAGGAGACAGATATAAGATAAACATCTGGTTGGCAGGTTATTTGTAGTTGGTGGTGTAGTTTGCTGTTGTGGCCAGAGGGGGAAGTTAGAGAGCTTATATGCGTGTGTCCCTTTAAACAGATGGTAATATAGATGTGTAGCTTTCAGGATCTGAACCATGATATAATAAAACACTGCCAGATCTGGCCCGGTGAGCTGCAAAGGGACCAAACTCAACTCTCCACCCCACTCTCCAAACTAACAACAACTggcaacaaagtattgagaacaTTCAAGAAATGGCAGATCCACTTTTCATCAATCCCAAATCCTGTTTAGCCCCTCTGAGTGGCACTAAATATGACAAGGACACCAATAATTGATGAAACACCAGTAAATGGCGCCACATCAGTAACGGCACACCATGTAAGCAGAGAGCTCGCCAAACTAACACACCATATATTTCTAATCTGCTgtcaaaccccccaaaaaagacAACCAGGACGATGATgatgaaaaggaggagaggatgacGAAACATAACAATCCCCGGTACCTGCTCTTCGTTCTACGATGTCATATCAACTGATCAGTTGCTCAGGCATCGTTGGCTCCTGTCTGCTGAAGATCCTCCTCTATGCATCCTCTCGGCGCTCCACAGCTCCCGCTGTAAAGCCTGAATATTTAAAAACAGGTGGTGGGCTAGGCGGGGCCTGTGGCTGCCCAAGCCCCTCCCCTCTATGCTGAGTCCCAATCCCAATGGCCCGTTTCAGCCTTGGGCCGCTGCCATTTGCTGGTTCAGTCCCGGGACTGGTAGAACAGGATGTAACCTGACTCAGAGTTCTTAGAAATGTCAGACGTTAGACCGTAGAACTCCTCGATCGCCT

Function

NR:

description
hypothetical protein Z043_120102

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1986817 False 5090 lncRNA 0.43 2 38051083 38056244
TU1986818 True 5092 lncRNA 0.43 2 38051083 38056244

Neighbor

gene id symbol gene type direction distance location
arhgap36 LOC106609060 coding upstream 301 37958017 ~ 38050782 (+)
nhsl2 nhsl2 coding upstream 97863 37801058 ~ 37953220 (+)
rs4x rs4x coding upstream 278129 37766654 ~ 37772954 (+)
LOC110500301 LOC106609063 coding downstream 20739 38076983 ~ 38083972 (+)
LOC110500338 LOC106609064 coding downstream 76815 38133059 ~ 38166964 (+)
col4a6 LOC106608923 coding downstream 239186 38295430 ~ 38482345 (+)
ankrd46b ankrd46 coding downstream 427159 38483403 ~ 38496665 (+)
LOC118942926 NA coding downstream 449860 38506104 ~ 38514584 (+)
G1734963 NA non-coding upstream 3095 38047451 ~ 38047988 (+)
G1734960 NA non-coding upstream 6017 38043091 ~ 38045066 (+)
G1734921 NA non-coding upstream 73125 37977100 ~ 37977958 (+)
G1734878 NA non-coding upstream 144303 37906577 ~ 37906780 (+)
G1734877 NA non-coding upstream 146059 37904622 ~ 37905024 (+)
G1734980 NA non-coding downstream 19510 38075754 ~ 38076214 (+)
G1734981 NA non-coding downstream 20219 38076463 ~ 38076967 (+)
G1734959 NA non-coding downstream 31187 38087431 ~ 38088046 (+)
G1734988 NA non-coding downstream 34090 38090334 ~ 38090968 (+)
G1734989 NA non-coding downstream 35742 38091986 ~ 38092225 (+)
G1734961 NA other upstream 4577 38045108 ~ 38046506 (+)
cited1 LOC106609035 other upstream 287825 37758759 ~ 37765562 (+)
G1734479 NA other upstream 482130 37565428 ~ 37568953 (+)
G1734420 NA other upstream 679416 37370957 ~ 37371667 (+)
arrb2b LOC106608931 other downstream 811723 38867935 ~ 38939119 (+)
nat16 LOC106608942 other downstream 1123043 39179147 ~ 39211035 (+)
G1736098 NA other downstream 1177420 39233664 ~ 39289670 (+)
G1736484 LOC106608963 other downstream 1819512 39875756 ~ 39876950 (+)

Expression


Co-expression Network