G1734959


Basic Information

Item Value
gene id G1734959
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 38087431 ~ 38088046 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1986938
tgaccaaatagTGGTCTCATGGGCGAAACGTTATTTATATTTGTCACATCTGTCCCTTTGTTATATTTTATAGTCTTCTGTgatatataaagtgtaatatcgGGATGCAAACTGaaaatttaatacatttcaactctatttctgacatggtacaggttttctaagcccataaccatgtgagTGAGTAgattcaaagtagatttgttgaaGACTACCAAGAACCACTCTGTGacactgatttagcccactgcagtaaattaagatagctaggtgagacaatgtctttgctggtaacgtaactgaTTACAGTCCCCCCAAAAATTGTAATCATATCAGACATGTAACTCCCCAACcctaaacgcacacacacacacacacacgcacacacacacacttcaaaaccTTTTAACCCCTTGAGCCCTGGCCTTTAACCTATAAAATGAATCAGTCTCAGTATG
>TU1986941
tatcgGGATGCAAACTGaaaatttaatacatttcaactctatttctgacatggtacaggttttctaagcccataaccatgtgagTGAGTAgattcaaagtagatttgttgaaGACTACCAAGAACCACTCTGTGacactgatttagcccactgcagtaaattaagatagctaggtgagacaatgtctttgctggtaacgtaactgaTTACAGTCCCCCCAAAAATTGTAATCATATCAGACATGTAACTCCCCAACcctaaacgcacacacacacacacacacgcacacacacacacttcaaaaccTTTTAACCCCTTGAGCCCTGGCCTTTAACCTATAAAATGAATCAGTCTCAGTATG
>TU1986942
tatcgGGATGCAAACTGaaaatttaatacatttcaactctatttctgacatggtacaggttttctaagcccataaccatgtgagTGAGTAgattcaaagtagatttgttgaaGACTACCAAGAACCACTCTGTGacactgatttagcccactgcagtaaattaagatagctaggtgagacaatgtctttgctggtaacgtaactgaTTACAGTCCCCCCAAAAATTGTAATCATATCAGACATGTAACTCCCCAACcctaaacgcacacacacacacacacacgcacacacacacacttcaaaaccTTTTAACCCCTTGAGCCCTGGCCTTTAACCTATAAAATGAATCAGTCTCAGTATGTGGCAGTACAAGGATTCATCTCACAGTGGTGGCTGACCGAGTATCGCTATACTGGGTCATGCCCATTAGGGACCAAACGGACTGAAACGGTGCCTTTTTATTTTCAGTTTTCCGCTGAGTGCCCTATTAAACAAGACACTGAtgtttgagatgtagtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1986938 False 458 lncRNA 0.38 1 38087431 38087888
TU1986941 False 361 lncRNA 0.40 1 38087528 38087888
TU1986942 True 519 lncRNA 0.42 1 38087528 38088046

Neighbor

gene id symbol gene type direction distance location
LOC110500301 LOC106609063 coding upstream 3459 38076983 ~ 38083972 (+)
arhgap36 LOC106609060 coding upstream 36649 37958017 ~ 38050782 (+)
nhsl2 nhsl2 coding upstream 134211 37801058 ~ 37953220 (+)
LOC118943010 NA coding upstream 315984 37771313 ~ 37771447 (+)
LOC118943014 NA coding upstream 317508 37769848 ~ 37769923 (+)
LOC110500338 LOC106609064 coding downstream 45013 38133059 ~ 38166964 (+)
col4a6 LOC106608923 coding downstream 207384 38295430 ~ 38482345 (+)
ankrd46b ankrd46 coding downstream 395357 38483403 ~ 38496665 (+)
LOC118942926 NA coding downstream 418058 38506104 ~ 38514584 (+)
LOC110515117 LOC106608926 coding downstream 454333 38542379 ~ 38654406 (+)
G1734981 NA non-coding upstream 10464 38076463 ~ 38076967 (+)
G1734980 NA non-coding upstream 11217 38075754 ~ 38076214 (+)
G1734853 NA non-coding upstream 31187 38051083 ~ 38056244 (+)
G1734963 NA non-coding upstream 39443 38047451 ~ 38047988 (+)
G1734960 NA non-coding upstream 42365 38043091 ~ 38045066 (+)
G1734988 NA non-coding downstream 2288 38090334 ~ 38090968 (+)
G1734989 NA non-coding downstream 3940 38091986 ~ 38092225 (+)
G1734990 NA non-coding downstream 5798 38093844 ~ 38094201 (+)
G1735004 NA non-coding downstream 24840 38112886 ~ 38113534 (+)
G1734961 NA other upstream 40925 38045108 ~ 38046506 (+)
cited1 LOC106609035 other upstream 324173 37758759 ~ 37765562 (+)
G1734479 NA other upstream 518478 37565428 ~ 37568953 (+)
arrb2b LOC106608931 other downstream 779921 38867935 ~ 38939119 (+)
nat16 LOC106608942 other downstream 1091241 39179147 ~ 39211035 (+)
G1736098 NA other downstream 1145618 39233664 ~ 39289670 (+)
G1736484 LOC106608963 other downstream 1787710 39875756 ~ 39876950 (+)
G1737353 NA other downstream 1974660 40062706 ~ 40063325 (+)

Expression


Co-expression Network