G1734991


Basic Information

Item Value
gene id G1734991
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 38202302 ~ 38203063 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1986986
AGTTTATTATGTGAGCTGCAGGCATGTTGATAAGACAATGCACAGAAACACATTAGTCAAAGTACTGGAACAGAGCACTTAAGTGTGCACTTCCAAGTCAGGGGAGAAACGTTTCCACACAAAACGATGGACATGGGGTTTATTTTTCAGTCTTAAAAGTTTATAACAACTTCTGGATAAcataacataaaaaataaaataaaaaacagattttttaaaATGAATAAATGTCACCCCATGATGACATTACAAATTAAAAATAAGATTTGAAAAACAACATCACAGGAAGAATCTTCCCCCCACAGCTCTCCTCGTTGACCGTAGAATAGAAAAAGAAAGAATAGAACAAATTCTATTTGATTCTATTCTCGCAGTACGTAACATTACATGCATACCTACCACGCGCTAGTTCATAGTGGGACAACCTAGACCAGTGTTAAGATGTGAATTCATATCAATAATATACATTTTCAGGAGTGGAGATTTTATCATCAACCTGTTATGGCATGAAATCGGGTCATTTTCTAACCCCCCATTTAACTATTGAACGATAGATTACTAGTAGAAATCAAATACAAAAGCTTGAGTGATTGGCATTATCATACACAGTACATGATCATAATAGGATAGGGTTTTTGATTGGTTGGCAGGGAAACTTTGTTTACTCAGTTTCGTTGTCATGCCAATAGTTTTGtgaaatgtgaaaaaaaaattACCTTTTGGAGATAAAAATAATGAATGATGGAAAATAAACTCCCTCCC
>TU1986987
GAAACGTTTCCACACAAAACGATGGACATGGGGTTTATTTTTCAGTCTTAAAAGTTTATAACAACTTCTGGATAAcataacataaaaaataaaataaaaaacagattttttaaaATGAATAAATGTCACCCCATGATGACATTACAAATTAAAAATAAGATTTGAAAAACAACATCACAGGAAGAATCTTCCCCCCACAGCTCTCCTCGTTGACCGTAGAATAGAAAAAGAAAGAATAGAACAAATTCTATTTGATTCTATTCTCGCAGTACGTAACATTACATGCATACCTACCACGCGCTAGTTCATAGTGGGACAACCTAGACCAGTGTTAAGATGTGAATTCATATCAATAATATACATTTTCAGGAGTGGAGATTTTATCATCAACCTGTTATGGCATGAAATCGGGTCATTTTCTAACCCCCCATTTAACTATTGAACGATAGATTACTAGTAGAAATCAAATACAAAAGCTTGAGTGATTGGCATTATCATACACAGTACATGATCATAATAGGATAGGGTTTTTGATTGGTTGGCAGGGAAACTTTGTTTACTCAGTTTCGTTGTCATGCCAATAGTTTTGtgaaatgtgaaaaaaaaattACCTTTTGGAGATAAAAATAATGAATGATGGAAAATAAACTCCCTCCC
>TU1986988
TTCTGGATAAcataacataaaaaataaaataaaaaacagattttttaaaATGAATAAATGTCACCCCATGATGACATTACAAATTAAAAATAAGATTTGAAAAACAACATCACAGGAAGAATCTTCCCCCCACAGCTCTCCTCGTTGACCGTAGAATAGAAAAAGAAAGAATAGAACAAATTCTATTTGATTCTATTCTCGCAGTACGTAACATTACATGCATACCTACCACGCGCTAGTTCATAGTGGGACAACCTAGACCAGTGTTAAGATGTGAATTCATATCAATAATATACATTTTCAGGAGTGGAGATTTTATCATCAACCTGTTATGGCATGAAATCGGGTCATTTTCTAACCCCCCATTTAACTATTGAACGATAGATTACTAGTAGAAATCAAATACAAAAGCTTGAGTGATTGGCATTATCATACACAGTACATGATCATAATAGGATAGGGTTTTTGATTGGTTGGCAGGGAAACTTTGTTTACTCAGTTTCGTTGTCATGCCAATAGTTTTGtgaaatgtgaaaaaaaaattACCTTTTGGAGATAAAAATAATGAATGATGGAAAATAAACTCCCTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1986986 False 762 lncRNA 0.34 1 38202302 38203063
TU1986987 False 657 lncRNA 0.33 1 38202407 38203063
TU1986988 True 592 lncRNA 0.33 1 38202472 38203063

Neighbor

gene id symbol gene type direction distance location
LOC110500338 LOC106609064 coding upstream 35338 38133059 ~ 38166964 (+)
LOC110500301 LOC106609063 coding upstream 118330 38076983 ~ 38083972 (+)
arhgap36 LOC106609060 coding upstream 151520 37958017 ~ 38050782 (+)
nhsl2 nhsl2 coding upstream 249082 37801058 ~ 37953220 (+)
LOC118943010 NA coding upstream 430855 37771313 ~ 37771447 (+)
col4a6 LOC106608923 coding downstream 92367 38295430 ~ 38482345 (+)
ankrd46b ankrd46 coding downstream 280340 38483403 ~ 38496665 (+)
LOC118942926 NA coding downstream 303041 38506104 ~ 38514584 (+)
LOC110515117 LOC106608926 coding downstream 339316 38542379 ~ 38654406 (+)
LOC110500343 mtm1 coding downstream 459021 38662084 ~ 38720802 (+)
G1735004 NA non-coding upstream 88768 38112886 ~ 38113534 (+)
G1734990 NA non-coding upstream 108101 38093844 ~ 38094201 (+)
G1734989 NA non-coding upstream 110077 38091986 ~ 38092225 (+)
G1734988 NA non-coding upstream 111334 38090334 ~ 38090968 (+)
G1735056 NA non-coding downstream 23639 38226702 ~ 38227910 (+)
G1735479 NA non-coding downstream 102810 38305873 ~ 38306132 (+)
G1735483 NA non-coding downstream 105919 38308982 ~ 38309288 (+)
G1735466 NA non-coding downstream 106943 38310006 ~ 38310217 (+)
G1734961 NA other upstream 155796 38045108 ~ 38046506 (+)
G1734960 NA other upstream 157236 38043091 ~ 38045066 (+)
cited1 LOC106609035 other upstream 439044 37758759 ~ 37765562 (+)
G1734479 NA other upstream 633349 37565428 ~ 37568953 (+)
arrb2b LOC106608931 other downstream 664904 38867935 ~ 38939119 (+)
nat16 LOC106608942 other downstream 976224 39179147 ~ 39211035 (+)
G1736098 NA other downstream 1030601 39233664 ~ 39289670 (+)
G1736484 LOC106608963 other downstream 1672693 39875756 ~ 39876950 (+)
G1737353 NA other downstream 1859643 40062706 ~ 40063325 (+)

Expression


Co-expression Network