G1735986


Basic Information

Item Value
gene id G1735986
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 39034509 ~ 39178178 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1988066
gcgcacacacacacacacacacacacacacacacacacatgcccacggATGCatgcatacacgcacacacacatacacacagtcttcaGAGGTACTGTAATGACACACCTTTGAAATGTTCACCGTTTCACAGCCTTCATCAATGACCACCTCCTTCCATAATACATTTGATGCTGATAAATTGTCAGCTTATGGACGTGTTTTAGACAGCCAAACATCTGCAatggaaaaacaaaaaacacacagaaaGTATGAATTGTGACACATTAAATGTGATTTTGTGGGGGAAAGGAATCCACTGTTTGGCCTTCGTCGAGTTAAACTGCAAAGCCTTAACAAATCATATCACATGAAGAAATGTAGGAAACTATGGAAGGACAAGGTCTtcatcatctctttctctctctcctcagaggtCAGTGCAGCGCTCCTGCTTGCTGTAATGGTCGAACTGGCTCTTCCAGTGCATCATGTAGGAGGACCAGCGATGGAACTCCACCTTCCACTGACGCTCCGCCTCATCTATGTTA
>TU1988068
gcgcacacacacacacacacacacacacacacacacatgcccacggATGCatgcatacacgcacacacacatacacacagtcttcaGAGGTACTGTAATGACACACCTTTGAAATGTTCACCGTTTCACAGCCTTCATCAATGACCACCTCCTTCCATAATACATTTGATGCTGATAAATTGTCAGCTTATGGACGTGTTTTAGACAGCCAAACATCTGCAatggaaaaacaaaaaacacacagaaaGTATGAATTGTGACACATTAAATGTGATTTTGTGGGGGAAAGGAATCCACTGTTTGGCCTTCGTCGAGTTAAACTGCAAAGCCTTAACAAATCATATCACATGAAGAAATGTAGGAAACTATGGAAGGACAAGGTCTtcatcatctctttctctctctcctcagaggtCAGTGCAGCGCTCCTGCTTGCTGTAATGGTCGAACTGGCTCTTCCAGTGCATCATGTAGGAGGACCAGCGATGGAACTCCACCTTCCACTGACGCTCCGCCTCATCTATGTTA
>TU1988070
gcgcacacacacacacacacacacacacacacatgcccacggATGCatgcatacacgcacacacacatacacacagtcttcaGAGGTACTGTAATGACACACCTTTGAAATGTTCACCGTTTCACAGCCTTCATCAATGACCACCTCCTTCCATAATACATTTGATGCTGATAAATTGTCAGCTTATGGACGTGTTTTAGACAGCCAAACATCTGCAatggaaaaacaaaaaacacacagaaaGTATGAATTGTGACACATTAAATGTGATTTTGTGGGGGAAAGGAATCCACTGTTTGGCCTTCGTCGAGTTAAACTGCAAAGCCTTAACAAATCATATCACATGAAGAAATGTAGGAAACTATGGAAGGACAAGGTCTtcatcatctctttctctctctcctcagaggtCAGTGCAGCGCTCCTGCTTGCTGTAATGGTCGAACTGGCTCTTCCAGTGCATCATGTAGGAGGACCAGCGATGGAACTCCACCTTCCACTGACGCTCCGCCTCATCTATGTTA
>TU1988073
cccattcTGCTGATCTAGACATTTGGCTAAGACAAACTCTAACCAGGGctgaagtcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagtcttaacTGTGTTTTTTTCAGTGTAGTTATTTTCTAACCCAGCACACAGCGATTTACATGGCTCCAGATTCCTATAATAATTGATCAGAGGTTTTAGGTTTGGACCCACGCAGACTACATCCCAAATCCCACCCTATTCCATGTACTACTTCGACCAGAGTTTAGtcgtgcattatgtagggaatagggtgtacatTTGAGATGCAAAAGAAGACGCTACACAGACACAGATTGTATTTCTGAATCCCACCTCTTTTCCACAtggagtgcactactttcaaccagagcttagtagtgcaccatatagggaatagggtgtcatttgagacacgGGAGAAGACACGACACAGATACAACAACAGATCACCTAACTAatacagtcagagagaaagaaagaaggatagaagaacgggggggggggacagataTAAGAGATAGACGAACGCCAAGTGAACGGATACATGGTTAGACAGTGGAACAGTGGTCATAATAGCTGTTTTAAATAAAGATCATTCAAAATAAGCAGATAGCGAGATTTGTATCAACTGGAAAATAATAaagtgaagtaaaaaaaaaaaataagagtgATGTGGAACACAGAGGTTCAGTCGTACCACACttccgcgcacacacacacacacacatgcccacggATGCatgcatacacgcacacacacatacacacagtcttcaGAGGTACTGTAATGACACACCTTTGAAATGTTCACCGTTTCACAGCCTTCATCAATGACCACCTCCTTCCATAATACATTTGATGCTGATAAATTGTCAGCTTATGGACGTGTTTTAGACAGCCAAACATCTGCAatggaaaaacaaaaaacacacagaaaGTATGAATTGTGACACATTAAATGTGATTTTGTGGGGGAAAGGAATCCACTGTTTGGCCTTCGTCGAGTTAAACTGCAAAGCCTTAACAAATCATATCACATGAAGAAATGTAGGAAACTATGGAAGGACAAGGTCTtcatcatctctttctctctctcctcagaggtCAGTGCAGCGCTCCTGCTTGCTGTAATGGTCGAACTGGCTCTTCCAGTGCATCATGTAGGAGGACCAGCGATGGAACTCCACCTTCCACTGACGCTCCGCCTCATCTATGTTA
>TU1988067
agtATCTAAATAATTACAGATAGTCTTTGACTTtttcattttatatatatatttttttaaagctagACTACTCTACTCCAGTCGTTAAATAGGAGTTGTACATGCCGGTGAATACACCACTCATAATGATTCGATGAAAGACCCACTGACCAATCACAAGGCTGATCCTGATCCCTTCCACAATGTCAACAAACGCAAGTTCAAATAAATATGACATTCCACATATGACATCACAAAAGTATGACATCATGCAAAAACTGTATAGAGACGGGCGGATGGACACACAGACAAGTAGACAAAcacaagcagagagacagaggtggacaCAGatggacaaacaaacaaacaaaaggtaGACTCACAGTGACAGACAATTAGACACACATACGGagaacacacaaagacagacagacggacggattTCTCATGTCAAAGTCCCGGCGAGAGCAGCCAAACTCAGAACAATCTCAACAGATACGGAAGTGATCGTTAAACACTCCACACAGACAGTCTCTTACACTCTGACATCTGTAGTTGGTTTAAACCTGAAGAATGCAACTGCAAAATAAAATACTGAAAAAGAGTAACAAAAACCCACACATATAGTACGTATATGTCACATTAATGATAAATAACCTTAGTATAGACAAGAGTGGAGTACGTAACCCTGTTTTCTTTTTCCTTccatcttcccctctctttttatctttaccctctctctctccatttcccacTCACCCTtgctccatctctcatctctcctacccatgctctccatctctcgcccctctctcaccctcctccctctctctccatcagcccCAGCCACTGCAGCAGTGCAGTACAGCCCAGCCAGGGCCTGTCTGTCTCATAGCCAGCGAATGGCTGACGCAGCATCCTGTCGTTTCACTGGAGCACTgaatttaacacacacacacacacacacacacacacacacacaccgacagacagacacacactgagtgAATTACTTCAGTCTCCATTAGACTAACGAGAACCGTTCGTCCTCTggggacatggagagatggaggagagagagatggaggagagagagatgaggggaaggtggagagagagtggggggggggggggttgagacgggagagagatggataggacaaaagagagagatggaggggagcgAGACACATCGACCCGTTGGCACGGAGACAATATTAgtagtatgcacacacacacaccctcacgcCCACAAAATATAATACTTTACTGCATTCTGACGCTAGAACAAACAACAGTGGGTGTGACTGACATTCACAAGTGCTTGGCTACATATAGGTGATTGACAGAGGTATGTGGATATATACCGACAAGTGCATACAAACACTATCGCTCTcgcacacaccaaaacacacacacacacaccgaaacaCACAGAGTGGATTGAGAAACGTGCACGGAGTTCAGCGATGAAGTTCAGCGATGAACAAGATAGACGTGTGACATATAACATGACTACATGTCTATCTTGTTGATCGCTGAACTTGTGAGTACTGGTCCTCCGTGCACGCTtttccggtgtgtgtgtgtgtgtgtgtgtgtgtgctc
>TU1988071
agtATCTAAATAATTACAGATAGTCTTTGACTTtttcattttatatatatatttttttaaagctagACTACTCTACTCCAGTCGTTAAATAGGAGTTGTACATGCCGGTGAATACACCACTCATAATGATTCGATGAAAGACCCACTGACCAATCACAAGGCTGATCCTGATCCCTTCCACAATGTCAACAAACGCAAGTTCAAATAAATATGACATTCCACATATGACATCACAAAAGTATGACATCATGCAAAAACTGTATAGAGACGGGCGGATGGACACACAGACAAGTAGACAAAcacaagcagagagacagaggtggacaCAGatggacaaacaaacaaacaaaaggtaGACTCACAGTGACAGACAATTAGACACACATACGGagaacacacaaagacagacagacggacggattTCTCATGTCAAAGTCCCGGCGAGAGCAGCCAAACTCAGAACAATCTCAACAGATACGGAAGTGATCGTTAAACACTCCACACAGACAGTCTCTTACACTCTGACATCTGTAGTTGGTTTAAACCTGAAGAATGCAACTGCAAAATAAAATACTGAAAAAGAGTAACAAAAACCCACACATATAGTACGTATATGTCACATTAATGATAAATAACCTTAGTATAGACAAGAGTGGAGTACGTAACCCTGTTTTCTTTTTCCTTccatcttcccctctctttttatctttaccctctctctctccatttcccacTCACCCTtgctccatctctcatctctcctacccatgctctccatctctcgcccctctctcaccctcctccctctctctccatcagcccCAGCCACTGCAGCAGTGCAGTACAGCCCAGCCAGGGCCTGTCTGTCTCATAGCCAGCGAATGGCTGACGCAGCATCCTGTCGTTTCACTGGAGCACTgaatttaacacacacacacacacacacacacacacacacacaccgacagacagacacacactgagtgAATTACTTCAGTCTCCATTAGACTAACGAGAACCGTTCGTCCTCTggggacatggagagatggaggagagagagatggaggagagagagatgaggggaaggtggagagagagtggggggggggggggttgagacgggagagagatggataggacaaaagagagagatggaggggagcgAGACACATCGACCCGTTGGCACGGAGACAATATTAgtagtatgcacacacacacaccctcacgcCCACAAAATATAATACTTTACTGCATTCTGACGCTAGAACAAACAACAGTGGGTGTGACTGACATTCACAAGTGCTTGGCTACATATAGGTGATTGACAGAGGTATGTGGATATATACCGACAAGTGCATACAAACACTATCGCTCTcgcacacaccaaaacacacacacacacaccgaaacaCACAGAGTGGATTGAGAAACGTGCACGGAGTTCAGCGATGAAGTTCAGCGATGAACAAGATAGACGTGTGACATATAACATGACTACATGTCTATCTTGTTGATCGCTGAACTTGTGAGTACTGGTCCTCCGTGCACGCTtttccggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctc
>TU1988072
agtATCTAAATAATTACAGATAGTCTTTGACTTtttcattttatatatatatttttttaaagctagACTACTCTACTCCAGTCGTTAAATAGGAGTTGTACATGCCGGTGAATACACCACTCATAATGATTCGATGAAAGACCCACTGACCAATCACAAGGCTGATCCTGATCCCTTCCACAATGTCAACAAACGCAAGTTCAAATAAATATGACATTCCACATATGACATCACAAAAGTATGACATCATGCAAAAACTGTATAGAGACGGGCGGATGGACACACAGACAAGTAGACAAAcacaagcagagagacagaggtggacaCAGatggacaaacaaacaaacaaaaggtaGACTCACAGTGACAGACAATTAGACACACATACGGagaacacacaaagacagacagacggacggattTCTCATGTCAAAGTCCCGGCGAGAGCAGCCAAACTCAGAACAATCTCAACAGATACGGAAGTGATCGTTAAACACTCCACACAGACAGTCTCTTACACTCTGACATCTGTAGTTGGTTTAAACCTGAAGAATGCAACTGCAAAATAAAATACTGAAAAAGAGTAACAAAAACCCACACATATAGTACGTATATGTCACATTAATGATAAATAACCTTAGTATAGACAAGAGTGGAGTACGTAACCCTGTTTTCTTTTTCCTTccatcttcccctctctttttatctttaccctctctctctccatttcccacTCACCCTtgctccatctctcatctctcctacccatgctctccatctctcgcccctctctcaccctcctccctctctctccatcagcccCAGCCACTGCAGCAGTGCAGTACAGCCCAGCCAGGGCCTGTCTGTCTCATAGCCAGCGAATGGCTGACGCAGCATCCTGTCGTTTCACTGGAGCACTgaatttaacacacacacacacacacacacacacacacacacaccgacagacagacacacactgagtgAATTACTTCAGTCTCCATTAGACTAACGAGAACCGTTCGTCCTCTggggacatggagagatggaggagagagagatggaggagagagagatgaggggaaggtggagagagagtggggggggggggggttgagacgggagagagatggataggacaaaagagagagatggaggggagcgAGACACATCGACCCGTTGGCACGGAGACAATATTAgtagtatgcacacacacacaccctcacgcCCACAAAATATAATACTTTACTGCATTCTGACGCTAGAACAAACAACAGTGGGTGTGACTGACATTCACAAGTGCTTGGCTACATATAGGTGATTGACAGAGGTATGTGGATATATACCGACAAGTGCATACAAACACTATCGCTCTcgcacacaccaaaacacacacacacacaccgaaacaCACAGAGTGGATTGAGAAACGTGCACGGAGTTCAGCGATGAAGTTCAGCGATGAACAAGATAGACGTGTGACATATAACATGACTACATGTCTATCTTGTTGATCGCTGAACTTGTGAGTACTGGTCCTCCGTGCACGCTtttccggtgtgtgtgtgtgtgtgtgtgtgtgtgtgctc
>TU1988074
agtATCTAAATAATTACAGATAGTCTTTGACTTtttcattttatatatatatttttttaaagctagACTACTCTACTCCAGTCGTTAAATAGGAGTTGTACATGCCGGTGAATACACCACTCATAATGATTCGATGAAAGACCCACTGACCAATCACAAGGCTGATCCTGATCCCTTCCACAATGTCAACAAACGCAAGTTCAAATAAATATGACATTCCACATATGACATCACAAAAGTATGACATCATGCAAAAACTGTATAGAGACGGGCGGATGGACACACAGACAAGTAGACAAAcacaagcagagagacagaggtggacaCAGatggacaaacaaacaaacaaaaggtaGACTCACAGTGACAGACAATTAGACACACATACGGagaacacacaaagacagacagacggacggattTCTCATGTCAAAGTCCCGGCGAGAGCAGCCAAACTCAGAACAATCTCAACAGATACGGAAGTGATCGTTAAACACTCCACACAGACAGTCTCTTACACTCTGACATCTGTAGTTGGTTTAAACCTGAAGAATGCAACTGCAAAATAAAATACTGAAAAAGAGTAACAAAAACCCACACATATAGTACGTATATGTCACATTAATGATAAATAACCTTAGTATAGACAAGAGTGGAGTACGTAACCCTGTTTTCTTTTTCCTTccatcttcccctctctttttatctttaccctctctctctccatttcccacTCACCCTtgctccatctctcatctctcctacccatgctctccatctctcgcccctctctcaccctcctccctctctctccatcagcccCAGCCACTGCAGCAGTGCAGTACAGCCCAGCCAGGGCCTGTCTGTCTCATAGCCAGCGAATGGCTGACGCAGCATCCTGTCGTTTCACTGGAGCACTgaatttaacacacacacacacacacacacacacacacacacaccgacagacagacacacactgagtgAATTACTTCAGTCTCCATTAGACTAACGAGAACCGTTCGTCCTCTggggacatggagagatggaggagagagagatggaggagagagagatgaggggaaggtggagagagagtggggggggggggggttgagacgggagagagatggataggacaaaagagagagatggaggggagcgAGACACATCGACCCGTTGGCACGGAGACAATATTAgtagtatgcacacacacacaccctcacgcCCACAAAATATAATACTTTACTGCATTCTGACGCTAGAACAAACAACAGTGGGTGTGACTGACATTCACAAGTGCTTGGCTACATATAGGTGATTGACAGAGGTATGTGGATATATACCGACAAGTGCATACAAACACTATCGCTCTcgcacacaccaaaacacacacacacacaccgaaacaCACAGAGTGGATTGAGAAACGTGCACGGAGTTCAGCGATGAAGTTCAGCGATGAACAAGATAGACGTGTGACATATAACATGACTACATGTCTATCTTGTTGATCGCTGAACTTGTGAGTACTGGTCCTCCGTGCACGCTtttccggtgtgtgtgtgtgtgtgtgtgtgtgcttTGGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1988066 False 530 lncRNA 0.45 2 39034509 39089363
TU1988068 False 528 lncRNA 0.45 2 39034509 39089363
TU1988070 False 524 lncRNA 0.45 2 39034509 39089363
TU1988073 False 1289 lncRNA 0.43 2 39041503 39089363
TU1988067 False 1587 lncRNA 0.45 2 39086505 39178178
TU1988071 False 1593 lncRNA 0.45 2 39086505 39178178
TU1988072 False 1589 lncRNA 0.45 2 39086505 39178178
TU1988074 True 1590 lncRNA 0.45 2 39086505 39118227

Neighbor

gene id symbol gene type direction distance location
zgc:92664 LOC106608937 coding upstream 11645 39003738 ~ 39022864 (+)
alox12 LOC106608934 coding upstream 48276 38969383 ~ 38986233 (+)
LOC110500354 LOC106608903 coding upstream 66632 38956139 ~ 38982550 (+)
arrb2b LOC106608931 coding upstream 95390 38867935 ~ 38939119 (+)
hmgb3a LOC106608930 coding upstream 169979 38857116 ~ 38864530 (+)
nat16 LOC106608942 coding downstream 969 39179147 ~ 39211035 (+)
LOC110500362 LOC106608944 coding downstream 50470 39228648 ~ 39237917 (+)
nat16l LOC106608945 coding downstream 67653 39245831 ~ 39256597 (+)
LOC110500364 LOC106608946 coding downstream 144687 39322865 ~ 39331908 (+)
zanl LOC106608949 coding downstream 241952 39420130 ~ 39453254 (+)
G1735932 pelp1 non-coding upstream 79108 38943178 ~ 38955401 (+)
G1735820 NA non-coding upstream 364586 38669409 ~ 38669923 (+)
G1735778 NA non-coding upstream 406100 38592329 ~ 38628409 (+)
G1736093 NA non-coding downstream 13264 39191442 ~ 39191854 (+)
G1736133 NA non-coding downstream 117884 39296062 ~ 39302368 (+)
G1736154 ap1s1 non-coding downstream 162460 39340638 ~ 39362957 (+)
G1736209 NA non-coding downstream 272682 39450860 ~ 39451178 (+)
G1736377 NA non-coding downstream 526430 39704608 ~ 39705136 (+)
LOC110500301 LOC106609063 other upstream 952235 38076983 ~ 38083972 (+)
G1734961 NA other upstream 988003 38045108 ~ 38046506 (+)
G1734960 NA other upstream 989443 38043091 ~ 38045066 (+)
cited1 LOC106609035 other upstream 1271251 37758759 ~ 37765562 (+)
G1736098 NA other downstream 55486 39233664 ~ 39289670 (+)
G1736484 LOC106608963 other downstream 697578 39875756 ~ 39876950 (+)
G1737353 NA other downstream 884528 40062706 ~ 40063325 (+)
LOC110500409 LOC106599480 other downstream 1223326 40401452 ~ 40404840 (+)

Expression


Co-expression Network