G1736484 (LOC106608963)


Basic Information

Item Value
gene id G1736484
gene name LOC106608963
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 39875756 ~ 39876950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1988631
AGGTCGTCCTGCTGCCAGCGGGCGGAGTGGTATGGGTGTCTTGGCCAGGTAAGCAGGTGGAGTCTGATCATCATTGTCATCGAACACATAGACCCAGAGACTGCACCCTCTTAGGTACTCCAGAACGTCAGTGGTCACGGCCAGAGGGTAGCTGACCGTGTCGTTGAACAGTGGGTCGGCGCTGCACGGTATTGTGGGGGAGGCGTGAGGCGGCAGGTCGTAGAGACGGTACATGAGGTAGGAGTCCGGAAGTAGTTCCGGCCAGCGGGCGCTTAGACCCACGCAATGCTCTAGCACCACCTCCAGCTCGTTGGGTATACCTCTGCCATAGTCAAATAGTTCATGCTCACGCACACTGTCCTCCAAGCCTAGACCTCTCTGGGCCCAGATGGGGCTCCACTGTCTCTGTGGACTGATGGTCCTTCtgtccatcagtctgtctgtcatcctgtctgctcctctctctatccatctgtctgctcctctctctgtcattcggcctgctcctctctctatccgtctgtctgctcctctctctgtcattctgtccactcctctctctatcagtGTGTCCACGGGCTCCGAAGGAGGGAAGAGACGCACCCTGAAGTCCAGGATCCCTATGACATCTCCCTCCGAGCCTGCGATGTTGACTCGTCCGCTCAcctgctcccctctcctctctacc

Function

NR:

description
X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1988631 True 688 TUCP 0.58 3 39875756 39876950

Neighbor

gene id symbol gene type direction distance location
LOC110500384 LOC106608960 coding upstream 19251 39828322 ~ 39856505 (+)
acox3 acox3 coding upstream 169554 39673972 ~ 39706202 (+)
mpdu1b LOC106608952 coding upstream 275441 39595167 ~ 39600315 (+)
trnaw-cca-56 NA coding upstream 305029 39570656 ~ 39570727 (+)
zanl LOC106608949 coding upstream 422502 39420130 ~ 39453254 (+)
LOC110500831 NA coding downstream 68313 39945263 ~ 39952801 (+)
LOC110500392 LOC106608967 coding downstream 76329 39953279 ~ 39959230 (+)
LOC110500393 LOC106608968 coding downstream 95369 39972319 ~ 39997941 (+)
LOC110500394 LOC106608969 coding downstream 125948 40002898 ~ 40050645 (+)
tmm85 emc4 coding downstream 176931 40053881 ~ 40060698 (+)
G1736473 NA non-coding upstream 16837 39858619 ~ 39858919 (+)
G1736434 NA non-coding upstream 32794 39776431 ~ 39842962 (+)
G1736377 NA non-coding upstream 170620 39704608 ~ 39705136 (+)
G1736209 NA non-coding upstream 424578 39450860 ~ 39451178 (+)
G1736154 ap1s1 non-coding upstream 512799 39340638 ~ 39362957 (+)
G1737283 NA non-coding downstream 83124 39960074 ~ 39960286 (+)
G1737306 NA non-coding downstream 101786 39978736 ~ 39986609 (+)
G1737310 NA non-coding downstream 122465 39999415 ~ 39999762 (+)
G1737344 NA non-coding downstream 174499 40051449 ~ 40051766 (+)
G1737345 NA non-coding downstream 175816 40052766 ~ 40053023 (+)
G1736098 NA other upstream 586086 39233664 ~ 39289670 (+)
nat16 LOC106608942 other upstream 666271 39179147 ~ 39211035 (+)
arrb2b LOC106608931 other upstream 950828 38867935 ~ 38939119 (+)
LOC110500301 LOC106609063 other upstream 1793482 38076983 ~ 38083972 (+)
G1734961 NA other upstream 1829250 38045108 ~ 38046506 (+)
G1737353 NA other downstream 185756 40062706 ~ 40063325 (+)
LOC110500409 LOC106599480 other downstream 524554 40401452 ~ 40404840 (+)
G1737866 LOC103384823 other downstream 675061 40552011 ~ 40553853 (+)
G1738057 LOC100194703 other downstream 1116205 40955050 ~ 40997320 (+)
G1738119 NA other downstream 1147760 41024710 ~ 41029136 (+)

Expression


Co-expression Network