G1737306


Basic Information

Item Value
gene id G1737306
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 39978736 ~ 39986609 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1989599
gggcaatgggctctattactgattcaagtatttttagccagattctaattggtatgttgaattttatgttccttttgatggcatagaatgcccttcttgccttgtctctcagatcgttcacagctttgtggaagttacctgtggcgctgatgtttaggccaaggtatgtatagttttttgtgtgctctagggcaacggtgtctagatggaatttgtatttgtggtcccggcgactggaccttttttggaacaccattattttggtcttactgagatttactgtcagggcccaggtctggcagaatctgtgcagaagatctaggtgctgctgtaggccctccttggttggtgaagaagcaccagatcatcagcaaacagttgacatttgacttcagattctagtcgggtgaggccgggtgctgcagacttttctagtgcccgcgccagttcgttgatatatatgttgaagagggtggggcttaagctgcatccctgtctcaccccacagccctgtgtgaagaaatgtgtgtgttttttgccaattttaaccgcacacttgttgtttgtgtacatggattttataatgtcgtatgtttttcccccaacaccactttccatcaatttgtatagcagaccctcatgccaaattgagtcgaaggcttttttgaaatcaacaaagcatgtgaaaactttgcctttgttttggtttgtttggttgtcaattagggtgtgcagggtgaatacatggtctgttgtacggtaatttgctcagtacattgttttcattgaggaaatgtacgagtctgctgataatgataatgcagaggattttcccaaggttactgttgacgcatatcccacggtagttattggggtcaaataatgtctccacttttgtggattggggtggtcagtcattggttccaaatattggggaagatgccagagctaagggtGATGTTAAAGAgctttagtatagccaattggaatttgttgtctgtatatttgatcatttcattaaggataccatcaacaccacaggcctttttgggttggagggtttttattttgtcctgtaactcatttaAGGAAATTGGAGACTCccgtgggttctggtagtctttaatagtttattctaagatttgtatttgatcatgtatatgtttttgctctttattctttgttatagagccaaaaagattggagaagtggtttacccatacatctccattttggatagatcatttttcttgttgttgtttgtttagtgttttccaattttcacagaagtggttagagtctatggattcttcaattacattgagctgatttctgacgtgctgttccttctttttccgtagtgtatttctgtattgttttagtgattcaccatagtgaaggcgtagactcaggttttccgggtctctatgtttttggttggacaggtttctaaaaaaaaatcttcgatttttgcattcttcatcaaaccatttgtcattgttgttcattttcttcggttttctttTTGAGGTTTTtcgatttgatagggaagctgagaggtcaaatatactgttaagattttctactgccaagtttacaccttcactattactgtcatgtactgtcatgttgtgtcttgtttctgtcctttcccttcaccctgtctccctctgctggtcgttgttaggttaccttttctccccctctttcccccagctgtgccttgtctcctcctaactacctcgtcaccccttttcccacctgttccctttttccctctgattagtcctctatatctctctctgtttttgttcctgtctttgtcggattcttgtttgtgttgttcatgcctgaaccagactattgtcatgtttgctgcaaccttgtcctgtcctgtcggaacctgccggtccatctgagcctacgttttgttttgttattaaagaagctctgtttacgttaattcgcttttgggtcctcattcacgcaccgtaacaattacagtggaacgttttaccaaGGAAATTGTctgaaagggattgaatttgttgttgcctaattgttttttggtaagGTTTCCAAACTgtattccttccatctatagcatttcttaatgttactcagttactttggctttgatgcctcatgattgagtattgctctgttcaagtagactgtgattttgctgtggtctgatagggatGTCAGCGGGCTGActgaacactctgagagactctgggttgaggtcagtgataaagtagtctacagtactactaccaagagatgagctataggtgtacctactataggagtcccctcgaagcctaccattgactatgtacatacccagcgtgcgacagatctgcaggagttgtgacccgtttttgttggttatgttgtcatagttgtgtctaggggggcatatggggaaggaaatgctgtcacctccaggtaggtgtttgttcccctgtgtgctgagggtgtccgGTTcctgtccagttctggcatttaggtcaccacagacgaGTACATGTATCTGGGCCTGGAaattattgatttccccctccaagATGGAGAAGCTGTTTTCAATCAAGTATGGgtattctagtggggggatataggtagcacacaggaggaaatTTTTCTCTgatgagatcatttcctttttaAATTTCAagcaaaatgttgctgttttgattaatttaaaagtgacttaggtctgctctataccaaataagaataccccctgagtcccttccctgttttacTATCGGTTTGTTTGGTGGAAGGGACttccagctctctgtaacctagagggcaaccaggatgacaatgtctgtatttctgatttctttggtgaagtccaggttcctggtctttaggccaaaggcagatgacctcaggccttggatagtccatgattagatagtgaaggctttgtgttccataaagtgtccagtGTTGTTAGTCGTGTGGTTCGGCCTcagaccagtaagtgtgagcagagcctgctcaTCATCTGGTACATGTCATTGGCTTGAGCTTGTGTaggagtgggggttgggcctgtttacCTGCTCACGGCCTGAGCATATGTGTGACTTTCATGTGGAGGTCCTCTTTGCGAGAGTGGGGGCCATGGGGTAGGCAGGAGGGCCATAGGTCTGATCTGAAGGGGCCTATGTGGGCATG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1989599 True 3192 lncRNA 0.43 3 39978736 39986609

Neighbor

gene id symbol gene type direction distance location
LOC110500392 LOC106608967 coding upstream 19506 39953279 ~ 39959230 (+)
LOC110500831 NA coding upstream 25935 39945263 ~ 39952801 (+)
LOC110500384 LOC106608960 coding upstream 122231 39828322 ~ 39856505 (+)
acox3 acox3 coding upstream 272534 39673972 ~ 39706202 (+)
mpdu1b LOC106608952 coding upstream 378421 39595167 ~ 39600315 (+)
LOC110500394 LOC106608969 coding downstream 16289 40002898 ~ 40050645 (+)
tmm85 emc4 coding downstream 67272 40053881 ~ 40060698 (+)
LOC110500395 plcg coding downstream 99577 40086186 ~ 40102011 (+)
LOC110500396 NA coding downstream 126367 40112976 ~ 40116217 (+)
LOC110500397 LOC106608972 coding downstream 131682 40118291 ~ 40133485 (+)
G1737283 NA non-coding upstream 18450 39960074 ~ 39960286 (+)
G1736473 NA non-coding upstream 119817 39858619 ~ 39858919 (+)
G1736434 NA non-coding upstream 135774 39776431 ~ 39842962 (+)
G1736377 NA non-coding upstream 273600 39704608 ~ 39705136 (+)
G1736209 NA non-coding upstream 527558 39450860 ~ 39451178 (+)
G1737310 NA non-coding downstream 12806 39999415 ~ 39999762 (+)
G1737344 NA non-coding downstream 64840 40051449 ~ 40051766 (+)
G1737345 NA non-coding downstream 66157 40052766 ~ 40053023 (+)
G1737351 NA non-coding downstream 75055 40061664 ~ 40061904 (+)
G1737370 NA non-coding downstream 91024 40077633 ~ 40078011 (+)
G1736484 LOC106608963 other upstream 101786 39875756 ~ 39876950 (+)
G1736098 NA other upstream 689066 39233664 ~ 39289670 (+)
nat16 LOC106608942 other upstream 769251 39179147 ~ 39211035 (+)
arrb2b LOC106608931 other upstream 1053808 38867935 ~ 38939119 (+)
LOC110500301 LOC106609063 other upstream 1896462 38076983 ~ 38083972 (+)
G1737353 NA other downstream 76097 40062706 ~ 40063325 (+)
LOC110500409 LOC106599480 other downstream 414895 40401452 ~ 40404840 (+)
G1737866 LOC103384823 other downstream 565402 40552011 ~ 40553853 (+)
G1738057 LOC100194703 other downstream 1006546 40955050 ~ 40997320 (+)
G1738119 NA other downstream 1038101 41024710 ~ 41029136 (+)

Expression


Co-expression Network