XLOC_003672 (CABZ01044764.1)


Basic Information

Item Value
gene id XLOC_003672
gene name CABZ01044764.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40897326 ~ 40899889 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007133
agccacagttctctatacaataacacaagaccctgtgacggtggctgattagagacggatggtgtatttccagagttggtgaaatgaccaagcacaccttcttggtcatatgtggtgataataatgaagattatatttggacctgaaacatctgctagactccaggatagctgggagagtcaagttgtggatcatcatgaagattttcaaaagtcatgctggagtcttgaagagttcttagatgagcatcaccctatatccgtgcaccaggaaccaccagacgagcgatcagcagctactacattgtcatggataaaaaggtcatcctgtggctgggaagcacttcattcacaggacatgcttgatgagatttcctagctccagtttgttttcacacaagtttacagcatttataccttcatttaaactgctgtgtttgatatggaggaccaaggaaacaccaggggcctcatgtacgaagacttgcgtggaaatcttactaaaacattgcgtacgcacgaagctgtaaatgtgctgacgatatattgaactttcaaattgctctgatgaaacatcaagtttggaccaaaggactaaaacagcctttttgagcactggtcatacatattttgttaatACTGTTgatactaataaaacatttaaagcatatttgacattgttgcattttaaaaactgaatgaattgttgaagtggtgaatgttttcaaataaaatgttttttcttttgtaa

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0038092 nodal signaling pathway biological_process
GO:0032924 activin receptor signaling pathway biological_process
GO:0032925 regulation of activin receptor signaling pathway biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:1900107 regulation of nodal signaling pathway biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000105325

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007133 True 750 lncRNA 0.39 5 40897326 40899889

Neighbor

gene id symbol gene type direction distance location
XLOC_003670 CABZ01044767.1 coding upstream 8032 40889180 ~ 40889294 (+)
XLOC_003669 NA coding upstream 31784 40864955 ~ 40865542 (+)
XLOC_003668 errfi1a coding upstream 49711 40812590 ~ 40847615 (+)
XLOC_003667 slc45a1 coding upstream 223256 40649412 ~ 40674070 (+)
XLOC_003666 AL954137.2 coding upstream 255539 40617896 ~ 40641787 (+)
XLOC_003673 svbp coding downstream 164933 41064822 ~ 41067789 (+)
XLOC_003674 phf13 coding downstream 189685 41089574 ~ 41105632 (+)
XLOC_003675 camta1 coding downstream 210780 41110669 ~ 41157954 (+)
XLOC_003676 CABZ01087025.2 coding downstream 292440 41192329 ~ 41201272 (+)
XLOC_003677 CABZ01087025.1 coding downstream 323596 41223485 ~ 41235090 (+)
XLOC_003369 CR854846.2 misc upstream 24774244 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 28185330 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 28203063 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 28211727 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 28217298 12679732 ~ 12680028 (+)
XLOC_003662 NA non-coding upstream 463246 40220055 ~ 40434080 (+)
XLOC_003659 NA non-coding upstream 780680 40111481 ~ 40116646 (+)
XLOC_003655 NA non-coding upstream 970454 39576541 ~ 39926872 (+)
XLOC_003680 BX571706.1 non-coding downstream 565218 41465107 ~ 41465236 (+)
XLOC_003684 NA non-coding downstream 1033211 41933100 ~ 41934619 (+)
XLOC_003687 NA non-coding downstream 1114114 42014003 ~ 42018127 (+)

Expression


Co-expression Network