G1738048 (LOC100380853)


Basic Information

Item Value
gene id G1738048
gene name LOC100380853
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 40908741 ~ 40909526 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1990451
ggggggggagggacctccggtacctcactgtcctgcaggggaccagctaccaccggcctgaggagagacacatgaaacgaggggttaatacgataataggaagggagttgtaatcgataacacacctcgtttatcctcctcaggactttaaagggccctacacactgcggacccagcttccggcggggcaagcggagaggtaggtttcgggtcgagagccagaccctgtcccccggtacaaacacgggggcctcactgcggtggcggtcagcactcctcttctgccgtccactcgcttgtcgtagagattcctggacggccctccaggtctccttggagcgctgtacccattcctccaccgcaggagcctcggtctggctcggatgccatggtgccaggaccggctggtaccccaacacacactgaaaaggggacacgttagtagaggagtggcgtagggagttctgagccatttcagcccagggaatgtatcgtgcccactcccctggccgatcctggcaatacgaccgcagaaacctacccacctcctggttcactctctccacctgcccattactctcggggtgataaccggaggtcaggctgacagagacccccaaacgttccatgaacgctctccatacccgggacgtgaattgggggccccgatcagaaacgatgtcctccggcaccccgtagtgccggaagacatgggtgaataacgcctccgcagtctgtagggctgtagggataccgggcaacgggaggagacggcaggacttagag

Function

NR:

description
PREDICTED: transposon Tf2-1 polyprotein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1990451 True 786 lncRNA 0.60 1 40908741 40909526

Neighbor

gene id symbol gene type direction distance location
LOC110500419 LOC106608987 coding upstream 53598 40846992 ~ 40855143 (+)
LOC110500418 NA coding upstream 71559 40794449 ~ 40837182 (+)
LOC110500409 LOC106599480 coding upstream 503901 40401452 ~ 40404840 (+)
LOC110500405 LOC100194596 coding upstream 555852 40322170 ~ 40352889 (+)
LOC118942929 NA coding upstream 651696 40255990 ~ 40257045 (+)
LOC110500424 LOC106608992 coding downstream 140663 41050189 ~ 41058764 (+)
LOC110500425 LOC106608993 coding downstream 198920 41108446 ~ 41125934 (+)
LOC110500427 LOC106608994 coding downstream 221300 41130826 ~ 41183998 (+)
LOC110500431 LOC106608996 coding downstream 274743 41184269 ~ 41201121 (+)
prkd4 LOC106608995 coding downstream 293764 41203290 ~ 41215989 (+)
G1738047 NA non-coding upstream 69 40908223 ~ 40908672 (+)
G1738034 NA non-coding upstream 52015 40856590 ~ 40856726 (+)
G1737928 NA non-coding upstream 103197 40696559 ~ 40805544 (+)
G1737927 LOC106608986 non-coding upstream 116251 40764293 ~ 40792490 (+)
G1738049 LOC100380853 non-coding downstream 315 40909841 ~ 40910518 (+)
G1738050 NA non-coding downstream 1629 40911155 ~ 40911941 (+)
G1738055 NA non-coding downstream 13849 40923375 ~ 40926290 (+)
G1738057 LOC100194703 non-coding downstream 45524 40955050 ~ 40997320 (+)
G1738157 NA non-coding downstream 222701 41132227 ~ 41132653 (+)
G1737866 LOC103384823 other upstream 354888 40552011 ~ 40553853 (+)
G1737353 NA other upstream 845416 40062706 ~ 40063325 (+)
G1736484 LOC106608963 other upstream 1031791 39875756 ~ 39876950 (+)
G1736098 NA other upstream 1619071 39233664 ~ 39289670 (+)
G1738119 NA other downstream 115184 41024710 ~ 41029136 (+)
G1739103 NA other downstream 979285 41888811 ~ 41897856 (+)
cxcl8c cxcl8c other downstream 1375530 42285056 ~ 42288500 (+)
si:dkey-185m8.2 LOC106608874 other downstream 1445051 42354556 ~ 42370239 (+)

Expression


Co-expression Network