G1738182


Basic Information

Item Value
gene id G1738182
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 41167676 ~ 41167955 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1990593
cacctggtagtttggtggacgggactaccagctctctgtaaccgagagggcaaccagtgggtccatctcctctataccatgtttcttataggatgacaatgtctataTTTCTGattttctttggtgaagtccaggttcctgctctttaggccaaaggcaaaTTTCCTCAGGCCTTGGATTTTCAAGGATGAGATAGCAAAgcctttgtgttccataaagtgtccagtGTTGTtagtcgtgtggtttggcctcagaccagtaagtgtgagcagagcttGCT

Function

NR:

description
PREDICTED: RNA-directed DNA polymerase from mobile element jockey-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1990593 True 280 lncRNA 0.46 1 41167676 41167955

Neighbor

gene id symbol gene type direction distance location
LOC110500425 LOC106608993 coding upstream 41742 41108446 ~ 41125934 (+)
LOC110500424 LOC106608992 coding upstream 108912 41050189 ~ 41058764 (+)
LOC110500419 LOC106608987 coding upstream 312533 40846992 ~ 40855143 (+)
LOC110500418 NA coding upstream 330494 40794449 ~ 40837182 (+)
LOC110500409 LOC106599480 coding upstream 762836 40401452 ~ 40404840 (+)
LOC110500431 LOC106608996 coding downstream 16314 41184269 ~ 41201121 (+)
prkd4 LOC106608995 coding downstream 35335 41203290 ~ 41215989 (+)
LOC110500837 LOC106608998 coding downstream 56817 41224772 ~ 41247133 (+)
LOC110500434 LOC106609000 coding downstream 89368 41257323 ~ 41266367 (+)
LOC110500843 LOC106609004 coding downstream 416853 41584808 ~ 41601466 (+)
G1738174 NA non-coding upstream 15978 41151458 ~ 41151698 (+)
G1738173 NA non-coding upstream 16812 41150645 ~ 41150864 (+)
G1738172 NA non-coding upstream 19145 41148322 ~ 41148531 (+)
G1738170 NA non-coding upstream 20033 41147422 ~ 41147643 (+)
G1738167 NA non-coding upstream 22708 41144756 ~ 41144968 (+)
G1738185 NA non-coding downstream 5079 41173034 ~ 41173319 (+)
G1738265 zg57 non-coding downstream 182535 41350490 ~ 41351424 (+)
G1738291 NA non-coding downstream 222392 41390347 ~ 41525819 (+)
G1738303 NA non-coding downstream 305308 41473263 ~ 41480556 (+)
G1738119 NA other upstream 138540 41024710 ~ 41029136 (+)
G1738057 LOC100194703 other upstream 170356 40955050 ~ 40997320 (+)
G1737866 LOC103384823 other upstream 613823 40552011 ~ 40553853 (+)
G1737353 NA other upstream 1104351 40062706 ~ 40063325 (+)
G1739103 NA other downstream 720856 41888811 ~ 41897856 (+)
cxcl8c cxcl8c other downstream 1117101 42285056 ~ 42288500 (+)
si:dkey-185m8.2 LOC106608874 other downstream 1186622 42354556 ~ 42370239 (+)
G1739440 vax2 other downstream 1333394 42501349 ~ 42502357 (+)
G1740312 r1441 other downstream 2087698 43255653 ~ 43327738 (+)

Expression


Co-expression Network