G1738291


Basic Information

Item Value
gene id G1738291
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 41390347 ~ 41525819 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1990724
aggttgcaaagttcaagggggccgaatactttcgcaaggcactgtatacacacaaacacactggaccaacattgtccttctcgcgagataaatataaatgctaaggtttttcatgccagattgacatcatttacgttgtcataccagccagattaataagaataaatgatatgttccttggagaacacataatgatcaagctattgagtaacagaagatcagagaccattgacagccattttaccagtaggtatgataacttgtcatctttcatgttcaataacacaccaatcacatgtgacaacaggaaacacagcaggtcaaaagcaagcttactgtaaggccaggaaggtcttccacattactagaaacagaaagacagcattcctgggtgggctcaaatcaccaacttttaaattaacagtctaacgcgccaaccaattgcaccacagagacttgtggttatactgaccctcagcaggccaaagtctcatggaagctcaaaccaagtcaggaagggtcagttcacatctccacaatctgaaaaatgtcatccctgggtggtgatgatgcaccaacctttagattgacagtcaaacacgctaactgattgcactagagaggcttgtgttggcattgaccatcagcagggcaaaataacaggaatctcattacaggtccacgatgtcacatccacatcatggagcacaataAACTGAGAActgtcatccctgggtgggctcg
>TU1990727
aggtatgataacttgtcatctttcatgttcaacaacacaccaatcacatgtgacaacaggaaacacagcaggtcaaaagcaagcttactgtaaggccaggaaggtcttccacatcactagaaacagaaagacagcattcctgggtgggctcaaatcaccaacttttaaattaacagtctaacgcgccaaccaattgcaccacagagacttgtggttatactgatcctcagcaggccaaagtctcatggaagctcaagccaagtcaggaagggtcagttcacatctccacaatctgaaaaatgtcatccctgggtggtgtcgaagcaccaacctttagattgacagtcaaacaagCTAACTGACTGATTGCACTAGAGAgccttgtgttggcattgaccctcagcagggcaaaataacaggaatctcattacaggtccaggatgtAACATCCACATCatggaagaatgatgaagtggctagtcactttcatggcgtattggcgtacatatacacacaaacacactggaccaacattgtccttctcgcaagataaatatcaatgctaaggtttttcatgtcagattgacatcatttacgttgtcataccagccagattaataagaataaattatatgttccttggagaacacagaatgatcaagctattgagtaacagaagatcagagaccattgacagccattttaccagtaggtatcgtaacttgtcatctttcatgttcaacaacacaccaatcacatgtgacaacaggaaacacagcaggtcaaaagcaagcttactgtaaggccaggaaggtcttccatatcactagaaacagaaagacagcatccctgggtgggctcaaatcaccaacttttaaattaacagtctaacgcgccaactaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1990724 False 744 lncRNA 0.43 2 41390347 41392653
TU1990727 True 904 lncRNA 0.42 2 41455556 41525819

Neighbor

gene id symbol gene type direction distance location
LOC110500434 LOC106609000 coding upstream 123980 41257323 ~ 41266367 (+)
LOC110500837 LOC106608998 coding upstream 143214 41224772 ~ 41247133 (+)
prkd4 LOC106608995 coding upstream 174358 41203290 ~ 41215989 (+)
LOC110500431 LOC106608996 coding upstream 189226 41184269 ~ 41201121 (+)
LOC110500427 LOC106608994 coding upstream 206349 41130826 ~ 41183998 (+)
LOC110500843 LOC106609004 coding downstream 58989 41584808 ~ 41601466 (+)
LOC110500443 LOC106608913 coding downstream 83431 41609250 ~ 41615747 (+)
LOC110500439 LOC106609016 coding downstream 117188 41643007 ~ 41672302 (+)
LOC110500440 LOC106609014 coding downstream 150427 41676246 ~ 41688377 (+)
LOC110500441 LOC106609015 coding downstream 162626 41688445 ~ 41693821 (+)
G1738265 zg57 non-coding upstream 38923 41350490 ~ 41351424 (+)
G1738185 NA non-coding upstream 217028 41173034 ~ 41173319 (+)
G1738182 NA non-coding upstream 222392 41167676 ~ 41167955 (+)
G1738174 NA non-coding upstream 238649 41151458 ~ 41151698 (+)
G1738824 NA non-coding downstream 1850 41527669 ~ 41535345 (+)
G1738829 NA non-coding downstream 12673 41538492 ~ 41538694 (+)
G1738831 NA non-coding downstream 15074 41540893 ~ 41541142 (+)
G1738892 NA non-coding downstream 194584 41720403 ~ 41720637 (+)
G1738893 NA non-coding downstream 195861 41721680 ~ 41722008 (+)
G1738119 NA other upstream 361211 41024710 ~ 41029136 (+)
G1738057 LOC100194703 other upstream 393027 40955050 ~ 40997320 (+)
G1737866 LOC103384823 other upstream 836494 40552011 ~ 40553853 (+)
LOC110500409 LOC106599480 other upstream 986662 40401452 ~ 40404840 (+)
G1737353 NA other upstream 1327022 40062706 ~ 40063325 (+)
G1739103 NA other downstream 362992 41888811 ~ 41897856 (+)
cxcl8c cxcl8c other downstream 759237 42285056 ~ 42288500 (+)
si:dkey-185m8.2 LOC106608874 other downstream 828758 42354556 ~ 42370239 (+)
G1739440 vax2 other downstream 975530 42501349 ~ 42502357 (+)
G1740312 r1441 other downstream 1729834 43255653 ~ 43327738 (+)

Expression


Co-expression Network