G1739070


Basic Information

Item Value
gene id G1739070
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 41778827 ~ 41787548 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1991612
aatggccagcgatctagcgtcaggattaaatacaccacaagtctctgtggcgcaattggttagcgcgtcagactgttaatctaaaggttggtggttcgagcccacccagggacgacagttttcagtttgttgtgctccgtgatgtcctgtacctgttatgagattcctgttaaattgccgtgctgagggtcaatgccaacacaagcctctctcgtgcaatcagttagtgtgtttgactgtcaatctaaaggttggtgctttgacaccacccagggatgacatttttcagattgtgaagtcccccttcctgacttggcgtgagcttccatgagactttggcctgctgagggtcagtataaccacaagtctctgtggtgcaatttgttggcgcgttagactgttcatttaaaagttggtgatttgagcccacccagggatgctgtctttctatttctagtgatatggaagaccttcctggccttacagtaagcttgcttttgacc
>TU1991611
atataatgttgcgctgacgaacattgcgctacatctttgcccttttaaggccattcaaaaagctaacaaacattagaaaactacagggctacttccttgaaaatgttgctgcactttcgatgcacgttaacacaaccattggaaccaagtgttgttgtttcgtaaactccatgttcagttggatgagagcacgaatggccagcgatctagcgtcaggattaaatacaccacaagtctctgtggcgcaattggttagcgcgttagactgttaatctaaaggttggttgTTCAaacccacccagggacgacagttttcagtttgttgtgctccatgatgtcgatgtgatgtcctgtacctgttatgagattcctgttaaattgccgtgctgagggtcaatgccaacacaagcctctctcgtgcaatcagttagtgtgtttgactgtcaatctaaaggttggtgctttgacaccacccagggatgacatttttcagattgtgaagtcccccttcctgacttggcgtgagcttccatgagactttggcctgctgagggtcagtataaccacaagtctctgtggtgcaatttgttggcgcgttagactgttcatttaaaagttggtgatttgagcccacccagggatgctgtctttctatttctagtgatatggaagaccttcctggccttacagtaagcttgcttttgacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1991612 False 503 lncRNA 0.48 3 41778827 41787548
TU1991611 True 707 lncRNA 0.45 2 41780975 41787548

Neighbor

gene id symbol gene type direction distance location
LOC110500937 LOC106609011 coding upstream 23775 41749525 ~ 41755052 (+)
LOC110500441 LOC106609015 coding upstream 85006 41688445 ~ 41693821 (+)
LOC110500440 LOC106609014 coding upstream 90450 41676246 ~ 41688377 (+)
LOC110500439 LOC106609016 coding upstream 106525 41643007 ~ 41672302 (+)
LOC110500443 LOC106608913 coding upstream 163080 41609250 ~ 41615747 (+)
trnan-guu-133 NA coding downstream 694 41788242 ~ 41788315 (+)
trnan-guu-134 NA coding downstream 1867 41789415 ~ 41789488 (+)
trnan-guu-135 NA coding downstream 3039 41790587 ~ 41790660 (+)
trnan-guu-136 NA coding downstream 4214 41791762 ~ 41791835 (+)
trnan-guu-137 NA coding downstream 5389 41792937 ~ 41793010 (+)
G1738925 LOC100380853 non-coding upstream 8980 41769501 ~ 41769847 (+)
G1738924 NA non-coding upstream 9756 41768783 ~ 41769071 (+)
G1738893 NA non-coding upstream 56819 41721680 ~ 41722008 (+)
G1738892 NA non-coding upstream 58190 41720403 ~ 41720637 (+)
G1738831 NA non-coding upstream 237685 41540893 ~ 41541142 (+)
G1739078 NA non-coding downstream 11375 41798923 ~ 41799152 (+)
G1739115 NA non-coding downstream 133051 41920599 ~ 41926648 (+)
G1739131 NA non-coding downstream 147885 41935433 ~ 41937376 (+)
G1739093 NA non-coding downstream 325768 42113316 ~ 42120480 (+)
G1739245 NA non-coding downstream 334842 42122390 ~ 42123986 (+)
G1738119 NA other upstream 749691 41024710 ~ 41029136 (+)
G1738057 LOC100194703 other upstream 781507 40955050 ~ 40997320 (+)
G1737866 LOC103384823 other upstream 1224974 40552011 ~ 40553853 (+)
LOC110500409 LOC106599480 other upstream 1375142 40401452 ~ 40404840 (+)
G1737353 NA other upstream 1715502 40062706 ~ 40063325 (+)
G1739103 NA other downstream 101263 41888811 ~ 41897856 (+)
cxcl8c cxcl8c other downstream 497508 42285056 ~ 42288500 (+)
si:dkey-185m8.2 LOC106608874 other downstream 567029 42354556 ~ 42370239 (+)
G1739440 vax2 other downstream 713801 42501349 ~ 42502357 (+)
G1740312 r1441 other downstream 1468105 43255653 ~ 43327738 (+)

Expression


Co-expression Network