G1739115


Basic Information

Item Value
gene id G1739115
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 41920599 ~ 41926648 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1991673
TGTATAACACTGCTGGATTATGAGTTTTACAATATTTTCTGGCGTCTTTGAACTATTTTGCACCATTAAAATGTCCCCCTTCATCTCCTTCAAGCATGCTGATTATTTGCACTTGTTTTTTCCTGTAAATGCACTTGAAGTACCAAATTACTCAACATTGATATTTGCAAAAACATCACCTTAACAATCCAGTTCGGCATACGACGATGCTCTTTCTCCCTAAAACATGTCTCCTCCAATAACTCAGACTATAAGAACATAGCTATTAGATAACAATTGAGGTAACAGTTTACATTAGGTTGCCTTTATATCGTTGGACTATAAATAGTATCTTCCTTAACCAGATGAAATCGCACACCATTACACTGTAACTACACTTGACTTGCCCCAGATTCTTAATTAAGTCAACTTAGTCCTTGCATGTGAGGATATAATATTTGATGTGACTAGGTAGTATTTGGGCAGCAATGTTAAGTGTGATAGACAGTGGACTGGCAACTACCCTGGGGGCAAAACTGTGGCCCAATTCCAATTCTCCCCGATCTCCTTGAAGTGTGCACTCGTTCACTCCATGAAAATATTGAGATTGGTATTAGATATACGGTATACTGTCTAGAACAATCcaatgctcccccCCTGATTAGTTATTTGAGTTAGTCCATTTTGTGCCGGTGCAATACTGTAGTTTGAATGCTCAGAGGAGAGATTGGTGGTGAACCTTTCAGGACAGAATGGGTTTAAGGGAACAGGCAGGGATCAGAGCCAGAGATCCCTACATTACCAACGCAGCTTCCTTCCATCCATTTATCCATCCTTCATTCTTTTCAGTGGttaagcagagagagacaggaagaccacgCCCTCTCCCTGTCAAGTCTCTGCCCGCCGCCAGCAACGCACCTCTCGGCTGCCCAGTGAACATGTTGGGGGACAAGTGTGTGTGTTGAGCCATCCTAACAGAGGGAGATTCTTAACAGATACACACATTTATACAGAACAACAAACAAGTACAGCAGGTTGAAGTGAAGAGAAATGGTCCCGTACCAAAGAAATCCTATAAGAGTCCTGAGATTGCAGTGAATCTGCAGGTAGTTAACCCTTACTGGGCTCGTCTGTCTTATAGGACATTTTTGATAGGGCCATTTTTTAACTCTgtgttaaaaaaaacatgaatgttATTCTTCAGAGGGAGGTTAATTTATTGGCTTTATTAGACAGTCTTGAATTTATTGATTAAACTGCAAGGAgctggtggtgttggtagtgaaCAGTGATTAACCCCCATACAATCATGGCAAACCCATCATCACAGTTTTTGCAAAGCAAAAACTCTCCCTACAAAGTCTGTTTTATGAAtaccaaagatggtggataaacaAGAGTTGACTTTGGCCGTTAACCATTTTACAGTAATGGTCAAGGGTTCCTGTTTGTGTAAGTGGGATTTTTCATCTCTCGCGTGAGCATGCTTTTCCCGCACGAGCTCAGTTCCTCCATATAGGTTGCATTCCCTTGCATGCATCAACCGATGTTTGCGTGCCACGTCATCGACTGACTGATTGCTATAACATAATTCAAGTATCAGCTAATCACATtacctatccaggcgttgtaGGATAAGGTATGCATCATGAACGCCTGTGCAGAGGCACGCGGCCAATGTCTGGCATGTGAGAAAGGGAACAACTGCCTTTAGTTTATTTATTGTCCCCCTCTCACTTGCCCCGACCAACCAGAAAGAAATGAGCCAGTGAGATTTCTTGGCCTGGGAAACCCTCCCCCCCCCCAGGGGCAATCAGTAGACCAGAGTGGGCCTGCCTcgattagaagaaaaaaaattagGGAGTGGGGTGTCTCGCTTTCTCTACCGTTGCTGGTAATACTTACCAGCCAAGCGATCCCACTAGGCCACCATACACTGTGTCCATTGTCATTCACTAGGTCTCTATAGCTACAGCCATACCCAGGGGTGGGTGTGGCCAGCTGATCCGCAGCTAGAGCCACAGAACCCAGCCTAGATCCAAGATGGCAGCGGTGGAAGCGGAAAGCGTTGTGTACGGCGGACAGGCACAGAGGGATGGGTTGGGAGGAGGGGTGGCGAATACGGCGGTGTAGGAGTCACTAGCGGGGGCAGGAGATCCAAATGTGCCAAGCCTCAACACACCAACGACACCACACACTGGCTCACTCTATTAAAACATGTAGTCACACACAAAAAGTAAAGCACAAGCACAGAATCTCtcgccctaacacacacacaccagcacgacagagagagactgacggaacAGTCCAAATGTAGGTGCTGCAAGGCGAGAGACGGGACAATTCACTGGAAGTCTAGTAGGAGACATCACAGCAGCAGTGAGCAGTGATCCCTCCCCAAGATAAGCCCCCCG
>TU1991675
TGTATAACACTGCTGGATTATGAGTTTTACAATATTTTCTGGCGTCTTTGAACTATTTTGCACCATTAAAATGTCCCCCTTCATCTCCTTCAAGCATGCTGATTATTTGCACTTGTTTTTTCCTGTAAATGCACTTGAAGTACCAAATTACTCAACATTGATATTTGCAAAAACATCACCTTAACAATCCAGTTCGGCATACGACGATGCTCTTTCTCCCTAAAACATGTCTCCTCCAATAACTCAGACTATAAGAACATAGCTATTAGATAACAATTGAGGTAACAGTTTACATTAGGTTGCCTTTATATCGTTGGACTATAAATAGTATCTTCCTTAACCAGATGAAATCGCACACCATTACACTGTAACTACACTTGACTTGCCCCAGATTCTTAATTAAGTCAACTTAGTCCTTGCATGTGAGGATATAATATTTGATGTGACTAGGTAGTATTTGGGCAGCAATGTTAAGTGTGATAGACAGTGGACTGGCAACTACCCTGGGGGCAAAACTGTGGCCCAATTCCAATTCTCCCCGATCTCCTTGAAGTGTGCACTCGTTCACTCCATGAAAATATTGAGATTGGTATTAGATATACGGTATACTGTCTAGAACAATCcaatgctcccccCCTGATTAGTTATTTGAGTTAGTCCATTTTGTGCCGGTGCAATACTGTAGTTTGAATGCTCAGAGGAGAGATTGGTGGTGAACCTTTCAGGACAGAATGGGTTTAAGGGAACAGGCAGGGATCAGAGCCAGAGATCCCTACATTACCAACGCAGCTTCCTTCCATCCATTTATCCATCCTTCATTCTTTTCAGTGGttaagcagagagagacaggaagaccacgCCCTCTCCCTGTCAAGTCTCTGCCCGCCGCCAGCAACGCACCTCTCGGCTTGGTGGAGTAGATTGAGTTCCCACTTCCCATTTGCCTGCGCGACGTTTATTGTCTTCCCCCTCTCACCTCACACGCTTGGCTGTGTCTGGACGGCCGGGGACCCCATCCACCGAGGCAGACTAGGGGGGGAAGCACACACTGACGCTACTCCTCATTTTCTCTGCCACCCTGGTCCCCAGTCACATGGGTctccacacacagatacacacagccgcTGAGAGAAAGGAAGGGTACGAGGGTGGTATACGGGTTGTGTGCGGTGGGGTGGCAGAGGAGGTGTGAGCGAGGGAGGTGTGGACTATCGGAACGGGGGCTCAGGCGTGTGAAGGGAGAGTTCGGGGGCTCGGCGGAGGACGGCCTCCTTGCGGTTCGGTGGCGGCGGCAGCGGCGACTCATACACTCTGGGCACTGCCACCATAGCGGAGGCGGGCACCACTGGCCTGAGGGCGGAGTCCAGCGCCGTGACGTGACCGGGCTGGCCGTGGTGGTGGGCGTGGCCCGCAATGGCGTGGGCAGGGATGGCGGCCATGGCGTGGTGGTTGGGAGGTGGGTAGGCGTACTGGAGCTGTTGGAGTTGCTGGTACTGCTGGAGTTGCTGGTACTGTTGGTACTGCTGGTAATACTCTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1991673 False 2399 lncRNA 0.45 2 41920599 41923340
TU1991675 True 1537 lncRNA 0.51 5 41920599 41926648

Neighbor

gene id symbol gene type direction distance location
trnan-guu-197 NA coding upstream 40765 41879761 ~ 41879834 (+)
trnan-guu-196 NA coding upstream 43455 41877071 ~ 41877144 (+)
trnan-guu-195 NA coding upstream 44622 41875904 ~ 41875977 (+)
trnan-guu-194 NA coding upstream 48851 41871675 ~ 41871748 (+)
trnan-guu-193 NA coding upstream 50012 41870514 ~ 41870587 (+)
LOC110500845 LOC106608891 coding downstream 15973 41942621 ~ 41975186 (+)
LOC110500448 LOC106608889 coding downstream 79667 42006315 ~ 42052638 (+)
trnas-gcu-263 NA coding downstream 162021 42088669 ~ 42088750 (+)
trnas-gcu-264 NA coding downstream 163992 42090640 ~ 42090721 (+)
LOC110500450 clcn3 coding downstream 192624 42119272 ~ 42185004 (+)
G1739078 NA non-coding upstream 121447 41798923 ~ 41799152 (+)
G1739070 NA non-coding upstream 133051 41778827 ~ 41787548 (+)
G1738925 LOC100380853 non-coding upstream 150752 41769501 ~ 41769847 (+)
G1738924 NA non-coding upstream 151528 41768783 ~ 41769071 (+)
G1738893 NA non-coding upstream 198591 41721680 ~ 41722008 (+)
G1739131 NA non-coding downstream 8785 41935433 ~ 41937376 (+)
G1739093 NA non-coding downstream 186668 42113316 ~ 42120480 (+)
G1739245 NA non-coding downstream 195742 42122390 ~ 42123986 (+)
G1739084 NA non-coding downstream 215705 42142353 ~ 42143265 (+)
G1739286 LOC106608879 non-coding downstream 301466 42228114 ~ 42228789 (+)
G1739103 NA other upstream 22743 41888811 ~ 41897856 (+)
G1738119 NA other upstream 891463 41024710 ~ 41029136 (+)
G1738057 LOC100194703 other upstream 923279 40955050 ~ 40997320 (+)
G1737866 LOC103384823 other upstream 1366746 40552011 ~ 40553853 (+)
LOC110500409 LOC106599480 other upstream 1516914 40401452 ~ 40404840 (+)
cxcl8c cxcl8c other downstream 358408 42285056 ~ 42288500 (+)
si:dkey-185m8.2 LOC106608874 other downstream 427929 42354556 ~ 42370239 (+)
G1739440 vax2 other downstream 574701 42501349 ~ 42502357 (+)
G1740312 r1441 other downstream 1329005 43255653 ~ 43327738 (+)
LOC110500499 ubil other downstream 1340566 43267057 ~ 43268143 (+)

Expression


Co-expression Network