G1739131


Basic Information

Item Value
gene id G1739131
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 41935433 ~ 41937376 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1991694
GAGCATAACATCTCAGAAAGTACCCCAGTTTCACAAGGTAATGAAGCAGGACTATGCATTGTAACCTACTCTGAGTGAAGGCAAGGAAACTGTACCCTGTCTGGGTCCTGCGAGGCGCCATGTTGTCTCCCATAGGGGTTATAGTGTTCTCCACagctgtacaaacacacacagagagagaaacatgagtTATCAGCTCCCATGATCCTCTGGGGCAAGCAGGTGCAACTGTGATATCATGAGCGACAGATCTAGCCAATGGTTCCTTTAATCGACTTtgaggacgcacacacacactacctctggCAGTCCTGTGGGAGATCTCCTAGCGCGTGGACGTGGAGGCCGTGGGCACCAGGTCCCGTCGATCAAACAGCGCTCCTCAGACAGCTGCAGGAACCGCACCACCCCCTGAACAGGACCACTACCAACGATCATGGCTACCGCCGCCCCCAAGTctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacccCCAATGCCCTTGAGTACCGCCCTGCGTCCTGTGCTCCCTATGAGACCCTGCACCTCATGGGACGTCAGAGATGCTTCCACCAGAACCTCCTCCTTCCCCACGTCTATCCTCACCGACGCACTCCGGTACTCAGAATAAAGGAGAGGTGAGAAAGAGGGCACGAGGAacagaaaaaaaaagagaaagaaagaaaagggtGAGGAACCAAAACAGGGAGAGCGAAAAGCAATGAGGAGAACACACAGAGATGAGGAATGAAGGAAAAGAGAGATTACTGCTGCCATGTGACCGGCTATGCTTTAGATGGCTTTTAGTGGATGAATCTTGGAATGCATGGAGGGGCCCTGTGGTTTCGTTCCAGTGTTAAGTATTTGAGCAAAAGCAAGAGCAGCCCCTGGATTGCTAACTAAATTGCAATGTACTGCACTAGGATGTAACAGTAATTGCTAAGTAAATAATAACATTCATcatttgttctactgtattactatTGGTATGCAGCCTAGGGGCAATGCCCCTAATTCACATTGAGTTGTGTGTGCACACTGTAGAAGAAGTGTAGTTCGTAGCCTACTACACTAATCAATTATTTGAGTGGTGGAATGGACAGGTAAAA

Function

NR:

description
copper chaperone for superoxide dismutase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1991694 True 1132 lncRNA 0.49 2 41935433 41937376

Neighbor

gene id symbol gene type direction distance location
trnan-guu-197 NA coding upstream 55599 41879761 ~ 41879834 (+)
trnan-guu-196 NA coding upstream 58289 41877071 ~ 41877144 (+)
trnan-guu-195 NA coding upstream 59456 41875904 ~ 41875977 (+)
trnan-guu-194 NA coding upstream 63685 41871675 ~ 41871748 (+)
trnan-guu-193 NA coding upstream 64846 41870514 ~ 41870587 (+)
LOC110500845 LOC106608891 coding downstream 5245 41942621 ~ 41975186 (+)
LOC110500448 LOC106608889 coding downstream 68939 42006315 ~ 42052638 (+)
trnas-gcu-263 NA coding downstream 151293 42088669 ~ 42088750 (+)
trnas-gcu-264 NA coding downstream 153264 42090640 ~ 42090721 (+)
LOC110500450 clcn3 coding downstream 181896 42119272 ~ 42185004 (+)
G1739115 NA non-coding upstream 8785 41920599 ~ 41926648 (+)
G1739078 NA non-coding upstream 136281 41798923 ~ 41799152 (+)
G1739070 NA non-coding upstream 147885 41778827 ~ 41787548 (+)
G1738925 LOC100380853 non-coding upstream 165586 41769501 ~ 41769847 (+)
G1738924 NA non-coding upstream 166362 41768783 ~ 41769071 (+)
G1739093 NA non-coding downstream 175940 42113316 ~ 42120480 (+)
G1739245 NA non-coding downstream 185014 42122390 ~ 42123986 (+)
G1739084 NA non-coding downstream 204977 42142353 ~ 42143265 (+)
G1739286 LOC106608879 non-coding downstream 290738 42228114 ~ 42228789 (+)
G1739288 NA non-coding downstream 291739 42229115 ~ 42229351 (+)
G1739103 NA other upstream 37577 41888811 ~ 41897856 (+)
G1738119 NA other upstream 906297 41024710 ~ 41029136 (+)
G1738057 LOC100194703 other upstream 938113 40955050 ~ 40997320 (+)
G1737866 LOC103384823 other upstream 1381580 40552011 ~ 40553853 (+)
LOC110500409 LOC106599480 other upstream 1531748 40401452 ~ 40404840 (+)
cxcl8c cxcl8c other downstream 347680 42285056 ~ 42288500 (+)
si:dkey-185m8.2 LOC106608874 other downstream 417201 42354556 ~ 42370239 (+)
G1739440 vax2 other downstream 563973 42501349 ~ 42502357 (+)
G1740312 r1441 other downstream 1318277 43255653 ~ 43327738 (+)
LOC110500499 ubil other downstream 1329838 43267057 ~ 43268143 (+)

Expression


Co-expression Network