G1739286 (LOC106608879)


Basic Information

Item Value
gene id G1739286
gene name LOC106608879
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 42228114 ~ 42228789 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1991860
TCCCACTATGAGTAGGAAGTAGCGTCCCTGGGGCTGGCAGTAGCCAGGCATGGTACAGTGGTTGTTAATGGTCTTGGTCTGGTGGATCTGTGAGCGGTGGCGAGGGAACACCTCCCTCCAGACAACCAGCTGGCCCACGCGCTGCTCTGAGGCCAGGGGGAGGAGACAGTAGTGCTGGCAGTAGAGAGAGACGTCAAGCAGGTCCTCCTTGGGGAGGTGGTTTGCTATCAGATAGCCCTGGGGTTggacacaggcagagagacataCACGTCGAGAGACAAGAGACACAgagtacacacgcacacaggttggacacacacacacagaaaacacaatTGAATTTAGAATTTTTACTAACACAAGTCGCCCCATCGTATTAGAGTGCCAGACTCTTTCTATACAAAGGTCATGAGAATGGAGACTTGAACCTAGAGAACAACCTTCTACAAATCATGAATAATTCAGCATCAATTGATAGGCTGATGTGCCATCCAGAGAATGAGGGGGTACAGCATGTTATTCTGGGTGATGATAtcccatctacagtgcattcggaaagtattcagaccccttaatttcttccacattttgtcgcgttacagccttattctaagatgGATCAAATATTTTTCCCTCcttatcaatatacacacaataacccTTAACAACAGAGCAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1991860 True 676 lncRNA 0.48 1 42228114 42228789

Neighbor

gene id symbol gene type direction distance location
LOC110500456 LOC106608882 coding upstream 7490 42213444 ~ 42220624 (+)
LOC110500450 clcn3 coding upstream 43110 42119272 ~ 42185004 (+)
LOC118942801 NA coding upstream 95788 42120391 ~ 42132326 (+)
trnas-gcu-264 NA coding upstream 137393 42090640 ~ 42090721 (+)
trnas-gcu-263 NA coding upstream 139364 42088669 ~ 42088750 (+)
cxcl8c cxcl8c coding downstream 56340 42285056 ~ 42288500 (+)
si:dkey-185m8.2 LOC106608874 coding downstream 125767 42354556 ~ 42370239 (+)
si:ch211-1o7.2 ankrd53 coding downstream 178861 42407650 ~ 42410829 (+)
LOC110500464 NA coding downstream 244478 42473267 ~ 42482530 (+)
trnak-cuu-149 NA coding downstream 315595 42544384 ~ 42544456 (+)
G1739084 NA non-coding upstream 84849 42142353 ~ 42143265 (+)
G1739245 NA non-coding upstream 104128 42122390 ~ 42123986 (+)
G1739093 NA non-coding upstream 107634 42113316 ~ 42120480 (+)
G1739131 NA non-coding upstream 290738 41935433 ~ 41937376 (+)
G1739115 NA non-coding upstream 301466 41920599 ~ 41926648 (+)
G1739288 NA non-coding downstream 326 42229115 ~ 42229351 (+)
G1739289 NA non-coding downstream 630 42229419 ~ 42229623 (+)
G1739290 NA non-coding downstream 2425 42231214 ~ 42231492 (+)
G1739293 NA non-coding downstream 9968 42238757 ~ 42239201 (+)
G1739294 NA non-coding downstream 11329 42240118 ~ 42240394 (+)
G1739103 NA other upstream 330258 41888811 ~ 41897856 (+)
G1738119 NA other upstream 1198978 41024710 ~ 41029136 (+)
G1738057 LOC100194703 other upstream 1230794 40955050 ~ 40997320 (+)
G1737866 LOC103384823 other upstream 1674261 40552011 ~ 40553853 (+)
LOC110500409 LOC106599480 other upstream 1824429 40401452 ~ 40404840 (+)
G1739440 vax2 other downstream 272560 42501349 ~ 42502357 (+)
G1740312 r1441 other downstream 1026864 43255653 ~ 43327738 (+)
LOC110500499 ubil other downstream 1038425 43267057 ~ 43268143 (+)

Expression


Co-expression Network