G1739440 (vax2)


Basic Information

Item Value
gene id G1739440
gene name vax2
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 42501349 ~ 42502357 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1992021
GTCTGGGTCCACTCCTAAAAGTTTATCATGTCCGTCTTCACTGGAGGAGGTCGGGGTGGAAGCCGATGTACCCGGGGTATCGGTTGTGCTCTGCACCGGCGACCTGCCCCCAAGTTCGGTATGGCATTTGTCTATCCCGTCACGGCACTGAGAGTTGGATCCAAGGCGGTGGTTGTTGCGATCCTCGCCGATCTCATCCCCCATATTCGTGGCTTGATCGAACATCGATTTGAATATTGGTGTATATATCTTCTGTATTCTTCACCTCGCTATTGGGCAGTTATTGCTACTCTTTGCACCTTTAAGTCATTTGCAATAGTTCTCTTCAGCTGTGGTGAGGCAGACCATGCCCCAGAGTAGATCCAGTTAAAAAACAGAACCCGCCACGCCGACCTGGGATGGAACCGAGCTGCACTGCAAGTGTCTCGGCATGTTTCAGCACTATCTTGCGATCCGAAGTACAGGAGAGAGATCGTGGATGGTGGTGAGAATGAGGGGGCCCTTTGGACAAGCCTAGGGTCCCTCCTCAGCTATAGGACCGCGCTAAATCTAACATGCATGTTGTACGTACAGTAAGTGTATAGTCTACAAGGGGAGACCAGATCTATGACCAAAGAAGCTGGGAGGTGCTACACTTGCTCACCCacatataaataaaatgaaagaCGAGCGCGTAACCAGCAGAGGAACAGTCAGCCTCTGTACAGCACAGTCAGTTCACTCTCTGCATTCAAGAAATGACACCTTTTGTCCTATAAACCTTGCACCCCTGAGCATGGGCTTGAAATCAGTTAAATTTACCACCGTTTGAGTTGTTGGTTTCGGTGGAGCTGTCTTGGCGTGGTCACGGATGTTGGGTTGTTGGTGGTCTGCTCGGGGTCTTCTTCCTTTGGAGAGTGCAATAATGTATGTGTAGAGAATGTTGAGGGGCGTTCAAACAGGGGAAAGGGTCACATACGAGGCATAACGAACCAAGCGAGGCTTGACCGAGCCATTAACTGTGTGTAGC

Function

symbol description
vax2 Enables sequence-specific DNA binding activity. Acts upstream of or within several processes, including camera-type eye morphogenesis; negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator; and regulation of retinal ganglion cell axon guidance. Predicted to be active in nucleus. Is expressed in diencephalon; forebrain neural rod; head; and immature eye. Orthologous to human VAX2 (ventral anterior homeobox 2).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1992021 True 1009 TUCP 0.50 1 42501349 42502357

Neighbor

gene id symbol gene type direction distance location
LOC110500464 NA coding upstream 18819 42473267 ~ 42482530 (+)
si:ch211-1o7.2 ankrd53 coding upstream 90520 42407650 ~ 42410829 (+)
si:dkey-185m8.2 LOC106608874 coding upstream 131110 42354556 ~ 42370239 (+)
cxcl8c cxcl8c coding upstream 214487 42285056 ~ 42288500 (+)
LOC110500456 LOC106608882 coding upstream 280725 42213444 ~ 42220624 (+)
trnak-cuu-149 NA coding downstream 42027 42544384 ~ 42544456 (+)
trnan-guu-198 NA coding downstream 44710 42547067 ~ 42547140 (+)
LOC110500468 LOC106608867 coding downstream 66875 42569232 ~ 42586213 (+)
faah2b LOC106608863 coding downstream 131036 42633393 ~ 42641281 (+)
c21h4orf48 cssa07h4orf48 coding downstream 153004 42655361 ~ 42661164 (+)
G1739438 NA non-coding upstream 4125 42496955 ~ 42497224 (+)
G1739434 NA non-coding upstream 9544 42491438 ~ 42491805 (+)
G1739430 vax2 non-coding upstream 21183 42479741 ~ 42480166 (+)
G1739422 NA non-coding upstream 38199 42462812 ~ 42463150 (+)
G1739788 NA non-coding downstream 5592 42507949 ~ 42508187 (+)
G1739831 NA non-coding downstream 80176 42582533 ~ 42584132 (+)
G1739836 NA non-coding downstream 90629 42592986 ~ 42599053 (+)
LOC110500846 nat8l non-coding downstream 187271 42676945 ~ 42692054 (+)
G1739103 NA other upstream 603493 41888811 ~ 41897856 (+)
G1738119 NA other upstream 1472213 41024710 ~ 41029136 (+)
G1738057 LOC100194703 other upstream 1504029 40955050 ~ 40997320 (+)
G1740312 r1441 other downstream 753296 43255653 ~ 43327738 (+)
LOC110500499 ubil other downstream 764857 43267057 ~ 43268143 (+)
G1740366 LOC106608832 other downstream 886832 43389189 ~ 43390299 (+)
G1740398 NA other downstream 944693 43447050 ~ 43451167 (+)
G1740412 LOC106608825 other downstream 967461 43469818 ~ 43470325 (+)

Expression


Co-expression Network