G1739867


Basic Information

Item Value
gene id G1739867
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 42692495 ~ 42694785 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1992507
TACCGTATGTATCATAAGCCTATATACAAGACAACGTTATATAAAGAAATGCATTACTATGACCCGTGGCTATTTGTTGAAGTTTGAAATTTGCCAAAGGTGAAAGTTTTGTTGCATTTTTCTCTCAAACTGCTATGTTGTGTTCAAGAAGTGTCAACAAAATCCCGTATTTATCGGTATCATTTTGGAAACCCTGCTCACGTGCCATCTAATCAagcaataaaaacaaacaaacaatgagATAACGAAATACAATCGTATAAATTATTTTATTAGTGCGAAATGCTGCATTGTTGTTATATCTCATATGCTGGTGACGGAGGGTCGGTCGCCGTGACGTTATCACTGTTGGCATGGCAACACATCACCACTGACGATATGTTGAGGCCTGAATAAGAGGTGTGATTGTATAatgattatttttgtatttttctttatAAGAggtttcaaatgtttttttgtttcattttttttttaaatttgaagATGAATTCTACTGGTGTACCACTTGCATTGTTTGTACAGGTGTTATTGGGAGTATTGGGGGGAGAAAAGTCCCTCCCAGCAGAGAGGTGAAAGATGGCAGAGTTTCTGAAAGTGGTCTCTGTTATCTATCAGTCATGAGCTTTATTTATCAGTCTACATCTTGCTTCTGATTCTCTAGTAGTCAGGAGGAGTATCACAGTAACTCAACTACAGCCAGGGGTTTGTCACTACTACtgaaaataaaaatcaattaGCCCATATCAAAGTTTAAAACGCAAGCTGAAAAAAACCTCAATGAAAATCTTGTGTGATTTCCATGAAAGCGATTCaacgtttattttattttatatatactaTCAACAATTTAATAAAGTTGTAAAGTGTATTTTACTGTAAATAGCATCCACGGGGTATTTTTTATGATCATTTtgtaacagaaataccttaatataactttttttttacaaaatcacacacacttaaaaaatatatatatatccaaacCTGAGATTCAATTGTAATGATCTTTTCAACTCCCTCACTAAACTCACCAAGCCAGAGACCGTTGGTTCATTTTCAACTTCTTTCAGAGACCACTGCCATCTTTCCCAGGATCAAGGTTCTGTGTGGTTTAACCTCAGTAGTCAGAGAGAAAAGCCTACTGTTGTCCTGTTCTGATGGAGAGGGAGTGGCCTGTCAGTGGCTGGAGAGCACCCAACACTGTAGCACAGCACTTAGTGGATGTGTCCAAAATTGAACTTTATTCCctggcactacttttgaccatggctcATAGAGGTacggtcaaaagtactgcactgaatagggtgccatttcagactcaGCCAGTGTATTAGCTAGCCCTAGGAGTGTGCAGCAGCAACATATTCTCTCCACTTTCAGATCTTGAGCTGTCATGGCTGTCTGTTGCTAGGAAACCAACCCACACAAAGCGCAGCAGGGAAATGATATGCAGCCACACTGAGGGAGTGAGGAGGCAGGCAGGTCAACCAGCCGGGCCGCCcctgagggagagggggaggagtgtggGAGTGAGTGTGTGGCAAGGCTAAGGCTATGATTAAGAGGGGCGAGGGAACCTTGTATGAGGATGCCTTGGGTGCTTAAAGTAGGCCACTGGGGAAGAAAAATTAGGTAAACAGTGACAGGGAAAAGAGAGGGTTATTACAGAGAAGATGGATCAGGGTGCGATCGCAGACAGTTGAGGGTCTGAGACTGAAGAGCAAATGAGAAGAGGGCTAGGGGAACCCAAGGGAGACGGGTTCAATTGGCTCAAGGCCTTAGCAAGAGGTCAGCCAAGCAGAAAAGAGGTGAAAGGTGGTCACAAGGCAGAGGGATTTGACCGTGGTTAAAACGCGGTTAAGGTACGGCCGGCTCGACCAGACCGCGCCTGACCTTACCTGAATAGAGTGTAGATGCAGTGATGACCTGGTGTACCTTTCTGGGCTCGTATttacaaagcatctcagagtaggaatgctgGATCAGTTGgaccttttagatcacaatgaatacgATTTTATGGACTGGggaaacctgatcctagatcagcactcctactttgagacgctttatgaatacggACTATTCTTTATGTTCCTCCTTCTGACGTTCCTTTCTTTTGACTGCTGTATTGTTACTACTGATTAaccttcttttctttttttttttttgccgatCAATGGGAACACTGTAAAGCTGTAAAGATAAAGATTTCCTGCATTGTGAAAGAAAAATGGATGTACATATTGTATCAATTAAAACAACAATGCATAAAGCTTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1992507 True 2291 lncRNA 0.41 1 42692495 42694785

Neighbor

gene id symbol gene type direction distance location
LOC110500846 nat8l coding upstream 2216 42676945 ~ 42692054 (+)
c21h4orf48 cssa07h4orf48 coding upstream 31400 42655361 ~ 42661164 (+)
faah2b LOC106608863 coding upstream 51214 42633393 ~ 42641281 (+)
LOC110500468 LOC106608867 coding upstream 106282 42569232 ~ 42586213 (+)
trnan-guu-198 NA coding upstream 145355 42547067 ~ 42547140 (+)
LOC110500477 LOC106608861 coding downstream 95819 42790604 ~ 42800548 (+)
LOC110500479 LOC106608859 coding downstream 126930 42821715 ~ 42834094 (+)
LOC110500480 LOC106608857 coding downstream 307901 43002686 ~ 43034963 (+)
gmpr2 LOC106608854 coding downstream 346981 43041766 ~ 43055080 (+)
LOC110500484 LOC106608853 coding downstream 363727 43058512 ~ 43062374 (+)
G1739836 NA non-coding upstream 93442 42592986 ~ 42599053 (+)
G1739831 NA non-coding upstream 108363 42582533 ~ 42584132 (+)
G1739788 NA non-coding upstream 184308 42507949 ~ 42508187 (+)
G1739909 NA non-coding downstream 35225 42730010 ~ 42730232 (+)
G1740050 NA non-coding downstream 54039 42748824 ~ 42749078 (+)
G1740051 NA non-coding downstream 55432 42750217 ~ 42750478 (+)
G1740095 NA non-coding downstream 117099 42811884 ~ 42812200 (+)
G1740097 NA non-coding downstream 119996 42814781 ~ 42815092 (+)
G1739440 vax2 other upstream 190138 42501349 ~ 42502357 (+)
si:dkey-185m8.2 LOC106608874 other upstream 337168 42354556 ~ 42370239 (+)
cxcl8c cxcl8c other upstream 403995 42285056 ~ 42288500 (+)
G1739103 NA other upstream 794639 41888811 ~ 41897856 (+)
G1738119 NA other upstream 1663359 41024710 ~ 41029136 (+)
G1740312 r1441 other downstream 560868 43255653 ~ 43327738 (+)
LOC110500499 ubil other downstream 572429 43267057 ~ 43268143 (+)
G1740366 LOC106608832 other downstream 694404 43389189 ~ 43390299 (+)
G1740398 NA other downstream 752265 43447050 ~ 43451167 (+)
G1740412 LOC106608825 other downstream 775033 43469818 ~ 43470325 (+)

Expression


Co-expression Network