G1740135


Basic Information

Item Value
gene id G1740135
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 42869233 ~ 42869452 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1992821
GGGATGGTGGTGCCCACTGACAGGCCTTTCCCTCCGTCCGAGGGGTTGCCATTGATGTAGACCCTCCAGTCCCCGTCCCAGCTACGCCATGACACGCCGATGTGGTGCCACTGACCCGTGTTGACCGCCGGGCAGTCTGTGATACGCTCCTTACCGTTGACGTACAGGACCCACCTGgggaacagggagggagagagagagagagagaagtggaggcagg

Function

NR:

description
sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1992821 True 220 lncRNA 0.62 1 42869233 42869452

Neighbor

gene id symbol gene type direction distance location
LOC110500479 LOC106608859 coding upstream 35139 42821715 ~ 42834094 (+)
LOC110500477 LOC106608861 coding upstream 68685 42790604 ~ 42800548 (+)
LOC110500846 nat8l coding upstream 178954 42676945 ~ 42692054 (+)
c21h4orf48 cssa07h4orf48 coding upstream 208138 42655361 ~ 42661164 (+)
faah2b LOC106608863 coding upstream 227952 42633393 ~ 42641281 (+)
LOC110500480 LOC106608857 coding downstream 133234 43002686 ~ 43034963 (+)
gmpr2 LOC106608854 coding downstream 172314 43041766 ~ 43055080 (+)
LOC110500484 LOC106608853 coding downstream 189060 43058512 ~ 43062374 (+)
tinf2 LOC106608852 coding downstream 204833 43074285 ~ 43079143 (+)
efs LOC106608851 coding downstream 229285 43098737 ~ 43112481 (+)
G1740134 NA non-coding upstream 2081 42866718 ~ 42867152 (+)
G1740131 NA non-coding upstream 5309 42863695 ~ 42863924 (+)
G1740127 LOC106608858 non-coding upstream 8955 42859846 ~ 42860278 (+)
G1740103 NA non-coding upstream 30473 42836144 ~ 42838760 (+)
G1740101 NA non-coding upstream 48158 42819086 ~ 42821075 (+)
G1740136 NA non-coding downstream 172 42869624 ~ 42869832 (+)
G1740137 NA non-coding downstream 1292 42870744 ~ 42870944 (+)
G1740139 LOC106608858 non-coding downstream 5963 42875415 ~ 42875636 (+)
G1740142 NA non-coding downstream 13067 42882519 ~ 42882877 (+)
G1740161 NA non-coding downstream 44737 42914189 ~ 42914390 (+)
G1739440 vax2 other upstream 366876 42501349 ~ 42502357 (+)
si:dkey-185m8.2 LOC106608874 other upstream 513906 42354556 ~ 42370239 (+)
cxcl8c cxcl8c other upstream 580733 42285056 ~ 42288500 (+)
G1739103 NA other upstream 971377 41888811 ~ 41897856 (+)
G1738119 NA other upstream 1840097 41024710 ~ 41029136 (+)
G1740312 r1441 other downstream 386201 43255653 ~ 43327738 (+)
LOC110500499 ubil other downstream 397762 43267057 ~ 43268143 (+)
G1740366 LOC106608832 other downstream 519737 43389189 ~ 43390299 (+)
G1740398 NA other downstream 577598 43447050 ~ 43451167 (+)
G1740412 LOC106608825 other downstream 600366 43469818 ~ 43470325 (+)

Expression


Co-expression Network