G1740139 (LOC106608858)


Basic Information

Item Value
gene id G1740139
gene name LOC106608858
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 42875415 ~ 42875636 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1992825
CACACATCCTCCCCTTCAGCACAGACCCAGGTCGACAGAACAGAGAGGCCCTCTTGCTCTCCAGGGACTTGGGGTCAGCCACCACGATCATCTCAGACGACACGTGATAGGATGACAGCGGCTGCTTGGCCAGCGTCCGCTTcaagcgattggttagctgctccaGGATCCGCAGCAGGCGCTTCTGATTGGCTACCTCCACTGAGTCGTTCCGGGATGAGG

Function

NR:

description
sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1992825 True 222 lncRNA 0.59 1 42875415 42875636

Neighbor

gene id symbol gene type direction distance location
LOC110500479 LOC106608859 coding upstream 41321 42821715 ~ 42834094 (+)
LOC110500477 LOC106608861 coding upstream 74867 42790604 ~ 42800548 (+)
LOC110500846 nat8l coding upstream 185136 42676945 ~ 42692054 (+)
c21h4orf48 cssa07h4orf48 coding upstream 214320 42655361 ~ 42661164 (+)
faah2b LOC106608863 coding upstream 234134 42633393 ~ 42641281 (+)
LOC110500480 LOC106608857 coding downstream 127050 43002686 ~ 43034963 (+)
gmpr2 LOC106608854 coding downstream 166130 43041766 ~ 43055080 (+)
LOC110500484 LOC106608853 coding downstream 182876 43058512 ~ 43062374 (+)
tinf2 LOC106608852 coding downstream 198649 43074285 ~ 43079143 (+)
efs LOC106608851 coding downstream 223101 43098737 ~ 43112481 (+)
G1740137 NA non-coding upstream 4471 42870744 ~ 42870944 (+)
G1740136 NA non-coding upstream 5583 42869624 ~ 42869832 (+)
G1740135 NA non-coding upstream 5963 42869233 ~ 42869452 (+)
G1740134 NA non-coding upstream 8263 42866718 ~ 42867152 (+)
G1740131 NA non-coding upstream 11491 42863695 ~ 42863924 (+)
G1740142 NA non-coding downstream 6883 42882519 ~ 42882877 (+)
G1740161 NA non-coding downstream 38553 42914189 ~ 42914390 (+)
G1740162 NA non-coding downstream 39872 42915508 ~ 42915730 (+)
G1740206 NA non-coding downstream 105817 42981453 ~ 42981792 (+)
G1740209 NA non-coding downstream 108915 42984551 ~ 42985006 (+)
G1739440 vax2 other upstream 373058 42501349 ~ 42502357 (+)
si:dkey-185m8.2 LOC106608874 other upstream 520088 42354556 ~ 42370239 (+)
cxcl8c cxcl8c other upstream 586915 42285056 ~ 42288500 (+)
G1739103 NA other upstream 977559 41888811 ~ 41897856 (+)
G1738119 NA other upstream 1846279 41024710 ~ 41029136 (+)
G1740312 r1441 other downstream 380017 43255653 ~ 43327738 (+)
LOC110500499 ubil other downstream 391578 43267057 ~ 43268143 (+)
G1740366 LOC106608832 other downstream 513553 43389189 ~ 43390299 (+)
G1740398 NA other downstream 571414 43447050 ~ 43451167 (+)
G1740412 LOC106608825 other downstream 594182 43469818 ~ 43470325 (+)

Expression


Co-expression Network