G1740312 (r1441)


Basic Information

Item Value
gene id G1740312
gene name r1441
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43255653 ~ 43327738 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1993038
AAGTTTGTTACTTTTGTCGGTAGTTTATTACATTACATGATGATCCACATAAGCaacatgataataatgataaGATGATATAGAAATCATAATTAACATAAAGCTCTGAGTCTACACACTATGAAACTCGCTTTGTATAATATCTACGATTATAACATAAGATGGTAAGATAAAACATTAGGCTTCACATGAAGTACTGCACACAAACTCTCATTGTACAATATATGGAGAAGAAATGTGTATGTGGAGCAAGATTTCTACCTACATGTTCTGTTGGAGACAATGTAAGCAGAGTTTACAGTATGCAGGGAATAAGAGGTATCTTATTTTTCAGTTTCTATTCCAGGTGGGTATAGTGGTCTGCCTGGGGGCAACACCAGCAGAGCAGGCTATGAAATATGAGCTGGTCTCCAAGCACTCCTCCGTGAGCTTAAGGCACACAAAGCAGAACTCTTTATTGCACCTTGGACAGAGAATATTCTTACAACCAGTCTTGTCGTGTTCCACCCGTTGGCCACAGGTGGGACAGGCGCGAATGGAGGGGCAGTCGGTGACACCTGCCACCTGAGGGAGAGACGTGGTTTCGCAGTTCTTCAGCAGTTCCAGGTCCTGGTTGATACAGCCATCGTTGTCACAGCGGTCAGAGCGTGGCGCGGGACCTTTCCACTGCTTCAGGCACTGCCAGCAGAACTCATACCTCTGACCTTTGTCTGCAGTGCACACTGTGCAGAGGACACTGAGGTTGGTgaggtcctctctctctacaaagGTTTCGCAGACAGGGCACTGTTTTGTATTCACAGTATGTGGCAGCAGCCAAAGCTGCCATGGTCTTCTCAAAGTGCTCCATCTCCTCAGTGGTCAGAACAGCCAGCCTACGTACCTCCTGGTAAGACCACTCAGCACCACACATATCATAGGTGCCCTCCTCAAGCGGGGTCTCTTATACTGGGTCGTACGACGAAGGGGGGAAAACCAGGAATTACTAATGGTGCCTAGACCATACAGGGATACAGTTCTACAGTTAGCCCATTCCCACGTCctaggaggacacctggcacgaGACAAGACTATTGACAGAATCATGCAGAGATTCTATTGGCCCCGGGTCACCCGGGATGTGGCCAGGTATTGTAGGACGTGTGATCAATGTCAACGTACAGCTCCACGGCCACACCTACGTAACCCTTTGATTCCTCTCCCCATTATAGAGACTCCCTTTGAATGCATAGCTATGGACCTCGTAGGACCCCTCCTAAAATCCGCCAGAGGACATGAGTACATCCTAGTGGTTATAGATTACGCTACCAAGTTCCCGGAGGCCATACCCCTGCGTAACATGTCGTCAAAGGGAATTGCCAAGGAGTTATTCCTGATGTTCTCTCGT

Function

NR:

description
probable E3 ubiquitin-protein ligase RNF144A-A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1993038 True 1387 TUCP 0.48 3 43255653 43327738

Neighbor

gene id symbol gene type direction distance location
LOC110500497 LOC106608843 coding upstream 10546 43234646 ~ 43245107 (+)
LOC118942803 LOC106608806 coding upstream 23445 43222339 ~ 43232208 (+)
LOC110500496 LOC106608847 coding upstream 35971 43203539 ~ 43219682 (+)
LOC110500494 LOC106608896 coding upstream 93960 43158688 ~ 43161693 (+)
LOC110500490 LOC106608850 coding upstream 111230 43112790 ~ 43144423 (+)
LOC110500504 NA coding downstream 7942 43335680 ~ 43345779 (+)
oxa1l LOC106608836 coding downstream 18676 43346414 ~ 43354437 (+)
LOC110500510 ccnb1ip1 coding downstream 55143 43382881 ~ 43385078 (+)
LOC118942788 NA coding downstream 69816 43397554 ~ 43404747 (+)
LOC110500847 NA coding downstream 77760 43405498 ~ 43409042 (+)
G1740301 NA non-coding upstream 53027 43202422 ~ 43202626 (+)
G1740299 NA non-coding upstream 55364 43199907 ~ 43200289 (+)
G1740276 NA non-coding upstream 84064 43171376 ~ 43171589 (+)
G1740274 NA non-coding upstream 86113 43169263 ~ 43169540 (+)
G1740335 NA non-coding downstream 657 43328395 ~ 43328602 (+)
G1740336 LOC106565892 non-coding downstream 1165 43328903 ~ 43329165 (+)
G1740337 NA non-coding downstream 2332 43330070 ~ 43330342 (+)
G1740339 NA non-coding downstream 4392 43332130 ~ 43332567 (+)
G1740340 NA non-coding downstream 5738 43333476 ~ 43333693 (+)
G1739440 vax2 other upstream 753296 42501349 ~ 42502357 (+)
si:dkey-185m8.2 LOC106608874 other upstream 900326 42354556 ~ 42370239 (+)
cxcl8c cxcl8c other upstream 967153 42285056 ~ 42288500 (+)
G1739103 NA other upstream 1357797 41888811 ~ 41897856 (+)
G1738119 NA other upstream 2226517 41024710 ~ 41029136 (+)
G1740366 LOC106608832 other downstream 61451 43389189 ~ 43390299 (+)
G1740398 NA other downstream 119312 43447050 ~ 43451167 (+)
G1740412 LOC106608825 other downstream 142080 43469818 ~ 43470325 (+)
G1740453 NA other downstream 196998 43524736 ~ 43526726 (+)
G1740752 NA other downstream 885048 44212786 ~ 44213230 (+)

Expression


Co-expression Network