G1740336 (LOC106565892)



Basic Information


Item Value
gene id G1740336
gene name LOC106565892
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43328903 ~ 43329165 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1993069
CCGGTGGCTCCGGAGGATCGCCCAAAGACTGCCTTCGCCACCCCAGAGGGGCTTTTCCAGTATGTGAGGATGCCCTTCGGACTGCATGGTGCCGCTGCAACTTTCCAACGCCTCATGGATGCCATTCTACGGCCCCATCAAGAGTATGCAGCGGCATACATAGACGATGTGGTCATCCACAGCGAGGACTGGGATAGTCACCTCCTGCGATTACGGGCGGTGCTCGTGAGTTTGGAAGCCACAGGGTTGACAGCCAATCCAAA

Function


NR:

description
PREDICTED: uncharacterized protein LOC106565892

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1993069 True 263 lncRNA 0.58 1 43328903 43329165

Neighbor


gene id symbol gene type direction distance location
LOC110500503 LOC106608839 coding upstream 5029 43305093 ~ 43323874 (+)
LOC110500501 NA coding upstream 29598 43287190 ~ 43299305 (+)
LOC110500500 LOC106596943 coding upstream 50737 43268610 ~ 43278166 (+)
LOC110500499 ubil coding upstream 60761 43267057 ~ 43268143 (+)
LOC110500497 LOC106608843 coding upstream 83796 43234646 ~ 43245107 (+)
LOC110500504 NA coding downstream 6515 43335680 ~ 43345779 (+)
oxa1l LOC106608836 coding downstream 17249 43346414 ~ 43354437 (+)
LOC110500510 ccnb1ip1 coding downstream 53716 43382881 ~ 43385078 (+)
LOC118942788 NA coding downstream 68389 43397554 ~ 43404747 (+)
LOC110500847 NA coding downstream 76333 43405498 ~ 43409042 (+)
G1740335 NA non-coding upstream 301 43328395 ~ 43328602 (+)
G1740301 NA non-coding upstream 126277 43202422 ~ 43202626 (+)
G1740299 NA non-coding upstream 128614 43199907 ~ 43200289 (+)
G1740276 NA non-coding upstream 157314 43171376 ~ 43171589 (+)
G1740274 NA non-coding upstream 159363 43169263 ~ 43169540 (+)
G1740337 NA non-coding downstream 905 43330070 ~ 43330342 (+)
G1740339 NA non-coding downstream 2965 43332130 ~ 43332567 (+)
G1740340 NA non-coding downstream 4311 43333476 ~ 43333693 (+)
G1740345 NA non-coding downstream 15371 43344536 ~ 43371829 (+)
G1740367 LOC106608832 non-coding downstream 56062 43385227 ~ 43386232 (+)
G1740312 r1441 other upstream 1165 43255653 ~ 43327738 (+)
G1739440 vax2 other upstream 826546 42501349 ~ 42502357 (+)
si:dkey-185m8.2 LOC106608874 other upstream 973576 42354556 ~ 42370239 (+)
cxcl8c cxcl8c other upstream 1040403 42285056 ~ 42288500 (+)
G1740366 LOC106608832 other downstream 60024 43389189 ~ 43390299 (+)
G1740398 NA other downstream 117885 43447050 ~ 43451167 (+)
G1740412 LOC106608825 other downstream 140653 43469818 ~ 43470325 (+)
G1740453 NA other downstream 195571 43524736 ~ 43526726 (+)
G1740752 NA other downstream 883621 44212786 ~ 44213230 (+)

Expression



Co-expression Network