G1740339


Basic Information

Item Value
gene id G1740339
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43332130 ~ 43332567 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1993072
ggagagcagaaactgATTTACAACGGTTGTGTTTAATAACCATAAACCACCGTCAACAGAACAATACAATAcatgggtcaaacaaaacccggtaaATACCAGCACAAGCACTACAACAAACAATTATGGACAAGGACATGgaaggaaacagagggttaaatacacaacatgtaattgatggaattggaaccaggtgtgatggaagacaagacaaaaccaatggaaaatgaaaagtggatcggcgatggctagaaggtcagtgacgtcgaccgccgaactccgcccgaacaaggagagggaccaacaaGAGAGGGAGCAACAAGTGAAGAAcaggagaccttctcccattcttcacttccctcatcaactcattcCTTAACCACTGGCTGCATCCCGTCTGACTTCAAACTGGCCCGAGTCGCTCCCGTCCTCAAGAAA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1993072 True 438 lncRNA 0.46 1 43332130 43332567

Neighbor

gene id symbol gene type direction distance location
LOC110500503 LOC106608839 coding upstream 8256 43305093 ~ 43323874 (+)
LOC110500501 NA coding upstream 32825 43287190 ~ 43299305 (+)
LOC110500500 LOC106596943 coding upstream 53964 43268610 ~ 43278166 (+)
LOC110500499 ubil coding upstream 63988 43267057 ~ 43268143 (+)
LOC110500497 LOC106608843 coding upstream 87023 43234646 ~ 43245107 (+)
LOC110500504 NA coding downstream 3113 43335680 ~ 43345779 (+)
oxa1l LOC106608836 coding downstream 13847 43346414 ~ 43354437 (+)
LOC110500510 ccnb1ip1 coding downstream 50314 43382881 ~ 43385078 (+)
LOC118942788 NA coding downstream 64987 43397554 ~ 43404747 (+)
LOC110500847 NA coding downstream 72931 43405498 ~ 43409042 (+)
G1740337 NA non-coding upstream 1788 43330070 ~ 43330342 (+)
G1740336 LOC106565892 non-coding upstream 2965 43328903 ~ 43329165 (+)
G1740335 NA non-coding upstream 3528 43328395 ~ 43328602 (+)
G1740301 NA non-coding upstream 129504 43202422 ~ 43202626 (+)
G1740299 NA non-coding upstream 131841 43199907 ~ 43200289 (+)
G1740340 NA non-coding downstream 909 43333476 ~ 43333693 (+)
G1740345 NA non-coding downstream 11969 43344536 ~ 43371829 (+)
G1740367 LOC106608832 non-coding downstream 52660 43385227 ~ 43386232 (+)
G1740388 NA non-coding downstream 97716 43430283 ~ 43432161 (+)
G1740312 r1441 other upstream 4392 43255653 ~ 43327738 (+)
G1739440 vax2 other upstream 829773 42501349 ~ 42502357 (+)
si:dkey-185m8.2 LOC106608874 other upstream 976803 42354556 ~ 42370239 (+)
cxcl8c cxcl8c other upstream 1043630 42285056 ~ 42288500 (+)
G1740366 LOC106608832 other downstream 56622 43389189 ~ 43390299 (+)
G1740398 NA other downstream 114483 43447050 ~ 43451167 (+)
G1740412 LOC106608825 other downstream 137251 43469818 ~ 43470325 (+)
G1740453 NA other downstream 192169 43524736 ~ 43526726 (+)
G1740752 NA other downstream 880219 44212786 ~ 44213230 (+)

Expression


Co-expression Network