Gene
RNA
| Item | Value |
|---|---|
| gene id | G1740367 |
| gene name | LOC106608832 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048585.1 |
| NCBI id | CM023239.2 |
| chromosome length | 64935962 |
| location | 43385227 ~ 43386232 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| tetratricopeptide repeat protein 5-like isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1993104 | True | 722 | lncRNA | 0.44 | 2 | 43385227 | 43386232 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110500510 | ccnb1ip1 | coding | upstream | 149 | 43382881 ~ 43385078 (+) |
| oxa1l | LOC106608836 | coding | upstream | 30790 | 43346414 ~ 43354437 (+) |
| LOC110500504 | NA | coding | upstream | 39448 | 43335680 ~ 43345779 (+) |
| LOC110500503 | LOC106608839 | coding | upstream | 61353 | 43305093 ~ 43323874 (+) |
| LOC110500501 | NA | coding | upstream | 85922 | 43287190 ~ 43299305 (+) |
| LOC118942788 | NA | coding | downstream | 11322 | 43397554 ~ 43404747 (+) |
| LOC110500847 | NA | coding | downstream | 19266 | 43405498 ~ 43409042 (+) |
| LOC118942933 | NA | coding | downstream | 626621 | 44012853 ~ 44019901 (+) |
| LOC110500517 | LOC106608821 | coding | downstream | 653720 | 44039952 ~ 44050765 (+) |
| pop7 | pop7 | coding | downstream | 711705 | 44097937 ~ 44099926 (+) |
| G1740345 | NA | non-coding | upstream | 13398 | 43344536 ~ 43371829 (+) |
| G1740340 | NA | non-coding | upstream | 51534 | 43333476 ~ 43333693 (+) |
| G1740339 | NA | non-coding | upstream | 52660 | 43332130 ~ 43332567 (+) |
| G1740337 | NA | non-coding | upstream | 54885 | 43330070 ~ 43330342 (+) |
| G1740336 | LOC106565892 | non-coding | upstream | 56062 | 43328903 ~ 43329165 (+) |
| G1740388 | NA | non-coding | downstream | 44051 | 43430283 ~ 43432161 (+) |
| G1740411 | NA | non-coding | downstream | 76621 | 43462853 ~ 43463081 (+) |
| G1740408 | NA | non-coding | downstream | 78598 | 43464830 ~ 43466342 (+) |
| G1740415 | LOC106608825 | non-coding | downstream | 89631 | 43475863 ~ 43476299 (+) |
| G1740312 | r1441 | other | upstream | 57489 | 43255653 ~ 43327738 (+) |
| LOC110500499 | ubil | other | upstream | 117084 | 43267057 ~ 43268143 (+) |
| G1739440 | vax2 | other | upstream | 882870 | 42501349 ~ 42502357 (+) |
| si:dkey-185m8.2 | LOC106608874 | other | upstream | 1029900 | 42354556 ~ 42370239 (+) |
| cxcl8c | cxcl8c | other | upstream | 1096727 | 42285056 ~ 42288500 (+) |
| G1740366 | LOC106608832 | other | downstream | 2957 | 43389189 ~ 43390299 (+) |
| G1740398 | NA | other | downstream | 60818 | 43447050 ~ 43451167 (+) |
| G1740412 | LOC106608825 | other | downstream | 83586 | 43469818 ~ 43470325 (+) |
| G1740453 | NA | other | downstream | 138504 | 43524736 ~ 43526726 (+) |
| G1740752 | NA | other | downstream | 826554 | 44212786 ~ 44213230 (+) |
