G1740408


Basic Information

Item Value
gene id G1740408
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43464830 ~ 43466342 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1993161
GCTTCATCAAAAGCATTTATTTATTAATAAGTCATAGTAAAATGTCACACAAATTCACAAAGTGTTTAAGAAATGTCTGGCtcagtttggtgtgtgtgtgtgtgtgtgtgttctaaagaGTGCATGTTAAATAAATGACCACCAAGAGTAGGAAAAGGAAGGTATATTGCAACAGGAAAAATAGAATTTATCTtaaaggaaaaacaaaaatagTTTATCCAAAACTGTAGCACCTTTTTATCCCATAAGTCAATATTCCAACAGAttacaataatatatatatataaaaataaaaaaaataaaagcccCCTAAAAAGAATGAAAAACAATGACAATTTCCCCCGCGCATTAAAAAGGCCGTATTCCATTCGTCAACTCAACTCGGCTGTGGATCCTACCAACTACAGGGAAAGTGTAAGTTATATTCATTAgaaatatcatatatatccAGAAGAAGCACCAGAGAACCTTGTCCTCCCATAACACACCCTTTCAGTTGTTACAGAGGACAAAAATGACTTTCAAACCCTAATAAAAGTAAGGGGAGAACATTGACATCCTATAAATATAagaaacattttaaataaaaaaagaaatgtaCAATGTAAAATCCAGAAAAATTATAAATCTGTATATTAAGCAAACAACTAACAAAATCAGAGGTACAAAACAATGCAAAAATGGAAGCAATTCATTAAAACAAAAAGACCTGATGTACTCCTAAAGAGTTGTGACAATTGACTCTTTCGCCTTCCCGTGGAAATAAAcattatacatttgtaaaaacacAACACATACAAGAGTAAGAAAGACTAAAcagaaaatctaaaaaaaaaagactTGAAAACCCGTATGTTTCTAAGCATTTCaaacaattgtatttttattgtctCCTTATTCTTAATGCTTTTAGAAAAAAAATGCATCTTATTTATCTTCTAAATACAAGTCACAAGGCCAATGTGGTATATATCTAGGGCTGATCTAGTCTTAaagaaaatacattattttagaAGAGAAAAAAAACCACCCcacataaaatacacagcatttaCAAATTTCAGAAttcatgataaaaaaaaaagatatggaAATAATAAAATGTATGCCATTGATAACTGTCAACCCTTTGTTGCTTGTTCACGATGGCAGCTAGCACCAACTGCCTTTCCATTTTTTCTCAAGTCCTCCGGAAACCAGAACGCTGCTCATGAACAGTCTACAACAAGGGTAAACTGGCATTTGATTGGCGGTTCGGTTTTGTAAACAGTGATGAGTAGTAAACTGGTTTTCGATTGGCTGTTTGATCGGCAAGTATTAGCAGTAGTAAAAACATCTTAAATAacgaagggggaaaaaaaaaaaaaaaaaaggttaaaaatAACGTTTTTTAAAAGATGTTAAGTCCTGTCTGGCAGGAGTTTTGGTTATGGCTGTGAGACGTGGAGGGGGAGGAGCTTTATCACCGTGTACTCGGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1993161 True 1479 lncRNA 0.33 2 43464830 43466342

Neighbor

gene id symbol gene type direction distance location
LOC110500847 NA coding upstream 55788 43405498 ~ 43409042 (+)
LOC118942788 NA coding upstream 60083 43397554 ~ 43404747 (+)
LOC110500510 ccnb1ip1 coding upstream 79752 43382881 ~ 43385078 (+)
oxa1l LOC106608836 coding upstream 110393 43346414 ~ 43354437 (+)
LOC110500504 NA coding upstream 119051 43335680 ~ 43345779 (+)
LOC118942933 NA coding downstream 546511 44012853 ~ 44019901 (+)
LOC110500517 LOC106608821 coding downstream 573610 44039952 ~ 44050765 (+)
pop7 pop7 coding downstream 631595 44097937 ~ 44099926 (+)
LOC110500520 LOC106608811 coding downstream 659740 44126082 ~ 44154069 (+)
ufsp1 ufsp1 coding downstream 660332 44126674 ~ 44128053 (+)
G1740411 NA non-coding upstream 1749 43462853 ~ 43463081 (+)
G1740388 NA non-coding upstream 32669 43430283 ~ 43432161 (+)
G1740367 LOC106608832 non-coding upstream 78598 43385227 ~ 43386232 (+)
G1740345 NA non-coding upstream 93001 43344536 ~ 43371829 (+)
G1740415 LOC106608825 non-coding downstream 9521 43475863 ~ 43476299 (+)
G1740416 LOC106608825 non-coding downstream 10687 43477029 ~ 43477252 (+)
G1740414 NA non-coding downstream 11067 43477409 ~ 43477640 (+)
G1740417 NA non-coding downstream 12139 43478481 ~ 43479924 (+)
G1740418 NA non-coding downstream 14109 43480451 ~ 43480709 (+)
G1740398 NA other upstream 13663 43447050 ~ 43451167 (+)
G1740366 LOC106608832 other upstream 74531 43389189 ~ 43390299 (+)
G1740312 r1441 other upstream 137092 43255653 ~ 43327738 (+)
LOC110500499 ubil other upstream 196687 43267057 ~ 43268143 (+)
G1739440 vax2 other upstream 962473 42501349 ~ 42502357 (+)
G1740412 LOC106608825 other downstream 3476 43469818 ~ 43470325 (+)
G1740453 NA other downstream 58394 43524736 ~ 43526726 (+)
G1740752 NA other downstream 746444 44212786 ~ 44213230 (+)
LOC110500528 tmem256 other downstream 980218 44446186 ~ 44451532 (+)
LOC110500529 LOC106608720 other downstream 995040 44461338 ~ 44480565 (+)

Expression


Co-expression Network