G1740416 (LOC106608825)


Basic Information

Item Value
gene id G1740416
gene name LOC106608825
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43477029 ~ 43477252 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1993169
GCTCAGAGCTCCTCTTCCTCTTGCTGGGACTGGGGCAGTCCTCATTGGGGCGAGAGGAAGGGTGCGGGGTGTGCCGGATGACCGAGTACTCCCCGAGAGGGGGGGCCGGTCTCTTCAGCTGCCCTCCCAACATCTTCCCTGGGTAACCCCTCTGCTGCACCTGAGCCCACATATCCTCACCCAGCGATGTCGGACCCCTGAGAAGATGCTGCTCCTGAGGGTCC

Function

NR:

description
lysine-specific demethylase 6B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1993169 True 224 lncRNA 0.64 1 43477029 43477252

Neighbor

gene id symbol gene type direction distance location
LOC110500847 NA coding upstream 67987 43405498 ~ 43409042 (+)
LOC118942788 NA coding upstream 72282 43397554 ~ 43404747 (+)
LOC110500510 ccnb1ip1 coding upstream 91951 43382881 ~ 43385078 (+)
oxa1l LOC106608836 coding upstream 122592 43346414 ~ 43354437 (+)
LOC110500504 NA coding upstream 131250 43335680 ~ 43345779 (+)
LOC118942933 NA coding downstream 535601 44012853 ~ 44019901 (+)
LOC110500517 LOC106608821 coding downstream 562700 44039952 ~ 44050765 (+)
pop7 pop7 coding downstream 620685 44097937 ~ 44099926 (+)
LOC110500520 LOC106608811 coding downstream 648830 44126082 ~ 44154069 (+)
ufsp1 ufsp1 coding downstream 649422 44126674 ~ 44128053 (+)
G1740415 LOC106608825 non-coding upstream 730 43475863 ~ 43476299 (+)
G1740408 NA non-coding upstream 10687 43464830 ~ 43466342 (+)
G1740411 NA non-coding upstream 13948 43462853 ~ 43463081 (+)
G1740388 NA non-coding upstream 44868 43430283 ~ 43432161 (+)
G1740414 NA non-coding downstream 157 43477409 ~ 43477640 (+)
G1740417 NA non-coding downstream 1229 43478481 ~ 43479924 (+)
G1740418 NA non-coding downstream 3199 43480451 ~ 43480709 (+)
G1740419 NA non-coding downstream 3469 43480721 ~ 43481061 (+)
G1740420 NA non-coding downstream 4510 43481762 ~ 43482299 (+)
G1740412 LOC106608825 other upstream 6704 43469818 ~ 43470325 (+)
G1740398 NA other upstream 25862 43447050 ~ 43451167 (+)
G1740366 LOC106608832 other upstream 86730 43389189 ~ 43390299 (+)
G1740312 r1441 other upstream 149291 43255653 ~ 43327738 (+)
G1740453 NA other downstream 47484 43524736 ~ 43526726 (+)
G1740752 NA other downstream 735534 44212786 ~ 44213230 (+)
LOC110500528 tmem256 other downstream 969308 44446186 ~ 44451532 (+)
LOC110500529 LOC106608720 other downstream 984130 44461338 ~ 44480565 (+)
fcer1g LOC106608748 other downstream 1967275 45444361 ~ 45449712 (+)

Expression


Co-expression Network