G1740417


Basic Information

Item Value
gene id G1740417
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43478481 ~ 43479924 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1993170
TCAACAGCACCAATACAATACAGCCAGTTGAACTGGAGGGAGAACACGATTAGACAGAAATATGGACAGAGCAGTCAACACATGCCGGTAGGTCTTCCATGACATAATTCAGCGTGTGATGTAGAACTAGACAGGCGATGGGGTTGAGACTGGCGAAACGGGACAGAAGAGAGAGCGGCGCAAGGAGGAAGTCTAGCAATGGAACATTTTGCTGAGGAATGGGGAGGAGAGCTCACGCGCCTCTAGAACTAAAAATGTGTGCGTGGAGGTGTAGGTGGAGAGAATCTAGTGTAGAAACGGTTTCTGCTGCAGTAAAAAAAACGGCCAATTTAAACAACTTTTACACCAGTCTGGTGTAGTCCAGTCCAGGTACCGCAGGTATTGACCCCTGTGTCTGCCCATCTCTGTCAGTATTTGCTAGTGTACTCTGGTCCTGCTGTACTGTGTCCCTGCCCCTAGGGGGCGATGTTAGCTCTACTGTAGGATTATTAGCAGAGCAGATGGCTCTGGGGGAGTTAGCAGACCTAGGAGAGCACACGGAGGTTACTGTAATCCTTACAGACTAGCCaatggttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgTTCCGTGTGTGTTGAATCCACCTGGTTTTAATCCCATTAGAACAGGCGTGATGGAGAAGGAGAAGGCCCAACAGACCGTCTGAACAGGATTGGAGGATAGATTAAGAAGAAAATTTTAAAAAACGCTCTTcaaggaaggagagcGAGACAGTCGGACGATGAGAGCACAGGCTGTCCTGCCTGGATCTCACACCCACATGGCAGAAATGAGCCTGGCatatagtcacacacacacacacacacacacacacacacacacagagaaaaaagGCCATGATCCAAACATAAAGACATTACCTACAGTGGAACAAAAAAAGGAGACTCCTGCTCAAAACAGACACTCACTGTGAGCCACTCTTGCTCAGCAGAATGCTCCCCACTCCCCAGTCAGTGTTGCTTCCCGAAATTAGCCCTACTAGCGTGTGTAGTGGGtctatccctcttcctctccctctataAAAAGCCTAAGGAGAAGATATTTCAGGCGCTTCGTTTTTAGCTTCCATAGAGACGGAAATAAAAGACAACACTTGGCCATgctgacgcccccccccccccctctctcggtgagcgtgtgtgtgtgtgtatgtgatcacGATgcaccagacagacacacactcatgTAAAGAGAGCCCATGACCAGATGATCATAAACAGCTCTGGCTGGGGTTAACATATTCccacaaaaatacaaaatgttcacacacactcacctttCAAAATAGCACCGAGTTCAAGATCCTCTGCCTCGTCGAGTCTCAGCTTCTACAGCCAATCATCTCTGGGATTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1993170 True 1400 lncRNA 0.48 3 43478481 43479924

Neighbor

gene id symbol gene type direction distance location
LOC110500847 NA coding upstream 69439 43405498 ~ 43409042 (+)
LOC118942788 NA coding upstream 73734 43397554 ~ 43404747 (+)
LOC110500510 ccnb1ip1 coding upstream 93403 43382881 ~ 43385078 (+)
oxa1l LOC106608836 coding upstream 124044 43346414 ~ 43354437 (+)
LOC110500504 NA coding upstream 132702 43335680 ~ 43345779 (+)
LOC118942933 NA coding downstream 532929 44012853 ~ 44019901 (+)
LOC110500517 LOC106608821 coding downstream 560028 44039952 ~ 44050765 (+)
pop7 pop7 coding downstream 618013 44097937 ~ 44099926 (+)
LOC110500520 LOC106608811 coding downstream 646158 44126082 ~ 44154069 (+)
ufsp1 ufsp1 coding downstream 646750 44126674 ~ 44128053 (+)
G1740414 NA non-coding upstream 841 43477409 ~ 43477640 (+)
G1740416 LOC106608825 non-coding upstream 1229 43477029 ~ 43477252 (+)
G1740415 LOC106608825 non-coding upstream 2182 43475863 ~ 43476299 (+)
G1740408 NA non-coding upstream 12139 43464830 ~ 43466342 (+)
G1740411 NA non-coding upstream 15400 43462853 ~ 43463081 (+)
G1740418 NA non-coding downstream 527 43480451 ~ 43480709 (+)
G1740419 NA non-coding downstream 797 43480721 ~ 43481061 (+)
G1740420 NA non-coding downstream 1838 43481762 ~ 43482299 (+)
G1740421 NA non-coding downstream 2455 43482379 ~ 43482611 (+)
G1740422 NA non-coding downstream 3750 43483674 ~ 43483992 (+)
G1740412 LOC106608825 other upstream 8156 43469818 ~ 43470325 (+)
G1740398 NA other upstream 27314 43447050 ~ 43451167 (+)
G1740366 LOC106608832 other upstream 88182 43389189 ~ 43390299 (+)
G1740312 r1441 other upstream 150743 43255653 ~ 43327738 (+)
G1740453 NA other downstream 44812 43524736 ~ 43526726 (+)
G1740752 NA other downstream 732862 44212786 ~ 44213230 (+)
LOC110500528 tmem256 other downstream 966636 44446186 ~ 44451532 (+)
LOC110500529 LOC106608720 other downstream 981458 44461338 ~ 44480565 (+)
fcer1g LOC106608748 other downstream 1964603 45444361 ~ 45449712 (+)

Expression


Co-expression Network