G1740420


Basic Information

Item Value
gene id G1740420
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43481762 ~ 43482299 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1993173
agacagacgacaACATTCAGACACTAGTTCCTGACAGAGGCCTGGAGATCAGTGAGGAACTTGATAAGAGCGatgcgaggggggagagagagagagaagcttccGGCGTGtctggcggagggagagagcgagggatgagggagggacaCTAGTCCATTACATAACTGGCCCAGGATTGAGTTCtggaggaaacacacacacacaccgccaggAACAAGACAGCCCGCCTGCGTTCGTGCTGTTGCCAGGCTCccacagtgcgtgtgtgtgtgcgatgcAAACTAGCTCGTCACCATCGCATTTAAGcttttcccacacacacacacaaccgcctacacacacacagggagatacagccaaacacacacagaacatccTCCAGCAGGGATAGAGGGTCAGTTCAGGACAGAGCCAACTCTCTTCTACCATACTAACTATAGTACAGCACTGTAGCCCAGTCTAGATCTAGGGGTTTGGCCTTCTAATAAATAAACCAAGTGCTCCACATCAACCCCAGAAACACAGCAAACGCAATCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1993173 True 538 lncRNA 0.52 1 43481762 43482299

Neighbor

gene id symbol gene type direction distance location
LOC110500847 NA coding upstream 72720 43405498 ~ 43409042 (+)
LOC118942788 NA coding upstream 77015 43397554 ~ 43404747 (+)
LOC110500510 ccnb1ip1 coding upstream 96684 43382881 ~ 43385078 (+)
oxa1l LOC106608836 coding upstream 127325 43346414 ~ 43354437 (+)
LOC110500504 NA coding upstream 135983 43335680 ~ 43345779 (+)
LOC118942933 NA coding downstream 530554 44012853 ~ 44019901 (+)
LOC110500517 LOC106608821 coding downstream 557653 44039952 ~ 44050765 (+)
pop7 pop7 coding downstream 615638 44097937 ~ 44099926 (+)
LOC110500520 LOC106608811 coding downstream 643783 44126082 ~ 44154069 (+)
ufsp1 ufsp1 coding downstream 644375 44126674 ~ 44128053 (+)
G1740419 NA non-coding upstream 701 43480721 ~ 43481061 (+)
G1740418 NA non-coding upstream 1053 43480451 ~ 43480709 (+)
G1740417 NA non-coding upstream 1838 43478481 ~ 43479924 (+)
G1740414 NA non-coding upstream 4122 43477409 ~ 43477640 (+)
G1740416 LOC106608825 non-coding upstream 4510 43477029 ~ 43477252 (+)
G1740421 NA non-coding downstream 80 43482379 ~ 43482611 (+)
G1740422 NA non-coding downstream 1375 43483674 ~ 43483992 (+)
G1740425 NA non-coding downstream 4854 43487153 ~ 43487851 (+)
G1740426 NA non-coding downstream 6003 43488302 ~ 43488535 (+)
G1740427 NA non-coding downstream 7279 43489578 ~ 43489793 (+)
G1740412 LOC106608825 other upstream 11437 43469818 ~ 43470325 (+)
G1740398 NA other upstream 30595 43447050 ~ 43451167 (+)
G1740366 LOC106608832 other upstream 91463 43389189 ~ 43390299 (+)
G1740312 r1441 other upstream 154024 43255653 ~ 43327738 (+)
G1740453 NA other downstream 42437 43524736 ~ 43526726 (+)
G1740752 NA other downstream 730487 44212786 ~ 44213230 (+)
LOC110500528 tmem256 other downstream 964261 44446186 ~ 44451532 (+)
LOC110500529 LOC106608720 other downstream 979083 44461338 ~ 44480565 (+)
fcer1g LOC106608748 other downstream 1962228 45444361 ~ 45449712 (+)

Expression


Co-expression Network